KEGG   Flavobacterium johnsoniae GSE09: BB050_02761Help
Entry
BB050_02761       CDS       T04718                                 

Definition
(GenBank) Putative DNA ligase-like protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fjg  Flavobacterium johnsoniae GSE09
Pathway
fjg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fjg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BB050_02761
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fjg03400]
    BB050_02761
Enzymes [BR:fjg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BB050_02761
DNA repair and recombination proteins [BR:fjg03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BB050_02761
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme Alpha_TIF DNA_ligase_OB_2 PVL_ORF50
Motif
Other DBs
NCBI-ProteinID: AOC95856
LinkDB All DBs
Position
complement(3090763..3093324)
Genome map
AA seq 853 aa AA seqDB search
MSLSKYNQKRDFKQTREPKGKIEKSASELIFVVQKHAASHLHYDFRLEMDGVLKSWAVPK
GPSMDPEVKRLAMMVEDHPYSYKDFEGTIPEGNYGAGDVIVWDNGTYTSDEKTASDEKKL
LSDLAKGHLSFILKGKKLKGEFSLVKLHGKQENAWLLIKKNDKYASEEDILEKNKSVISK
RSLEQLVEKSEKLTSKSEEKTTEKKAVKKKSNPKADIAEFLKPMLASVSEKPFDDDEWIF
ENKYDGYRTIAVINPQQVDLFSRNELSFNANFKPIAEELKQIDHTVVLDGEIVVENDAGR
ADFQLLQNYMKTGIGNLKYYVFDLLNLDGNLITELSLLERKELLKILFNKYPFSNVSYSE
HTLGDGIKQFEKAVKNKTEGIIAKRADSTYTINRRSTNWLKIKTANEEEAIIIGITEPRN
SRKYIGALLLGQYDGKKLQYIGKCGTGFTESTLKDLYTKLEPLFTAKSPLDEKIPIRDKI
QWVNPKVVCQVKFSEWTQDQHLRHPVYLGIRIDKKAEEVFLSFPKDDSTQLNSDEMTITP
ENKKEKTENDYDLKVGKTVLHLTNQNKVYFPKDGITKGDIIHYYNEVSELILPYLKDRPE
SMNRFPNGIDSPSFYQKDVDVDKIPKWLKTKKVFSESNNADIDYLICNNKETLLYMANLG
CIEMNPWNSTTKHIQNPDWLVIDLDPAGNDFAPVITTALVVKEVLDELETECLCKTSGAS
GLHIYIPLGAKYDYDSIKILGELIAKEVQSRLPDITSIERSIKKRKNKLYIDFLQNRRGQ
TLAAPYSVRPKPGATVSTPLEWSEVNEKLHPSQFTIKNVLKRFEKKGDLWTPVLSKGADI
KKIIHKLEENQNV
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
atgtcactgtctaaatacaatcagaaaagagattttaaacaaacgcgtgaaccgaaagga
aaaatcgaaaaatcagcaagcgagctaatttttgtcgtgcagaaacatgctgcgtcacat
cttcattacgattttaggttagagatggacggtgttttaaaaagctgggcagtgccaaaa
ggcccgtcgatggatcctgaagtgaaacgtctagctatgatggtcgaagatcatccgtac
agctataaagattttgaaggcaccatcccagaaggaaattacggtgctggagatgtaatt
gtatgggataacggaacctatacttctgatgaaaaaacggcttctgacgaaaaaaaatta
ttgagcgatctggcaaaaggacatttgagttttattttaaagggcaaaaaattgaaaggt
gaattttctttagtcaagcttcatggaaaacaagaaaatgcttggctgctaattaagaaa
aatgataaatatgcttctgaagaagatattttagagaagaataaatcggttatttctaaa
agaagtctagaacaattggttgaaaaatctgaaaagctcacttcaaaaagcgaagagaaa
actactgagaaaaaagcagtaaaaaaaaagtccaacccaaaagctgacatcgccgaattt
ttaaaacccatgcttgccagcgtaagcgaaaaaccttttgatgatgacgaatggattttt
gaaaataaatacgacggctacagaacgattgccgttattaatccgcaacaggttgatttg
ttcagcagaaacgagctttcttttaatgctaatttcaaacccattgccgaagaattaaaa
caaattgaccacactgtagttttggatggcgaaattgtagtagaaaatgatgctggaaga
gccgattttcagctgcttcaaaactatatgaaaacaggaatcgggaatctaaaatattat
gtttttgatttattgaatttggacggaaatctcattacggaactctctttattggaaaga
aaagaactgctcaaaattctctttaataaatatcctttttctaatgtttcttattctgaa
catacccttggcgacggaattaaacaatttgaaaaagccgttaaaaataaaactgaaggc
attattgccaaaagagcagacagcacttacactataaatcgaagaagcaccaactggctt
aaaataaaaacagcaaatgaagaagaagctattataatcggcattaccgaaccgcgaaat
tccagaaaatatattggcgctcttttactcggacaatacgatggcaaaaaactgcaatat
attggcaaatgcggaactggttttacagaaagcacgctaaaagatttatataccaaacta
gaaccgctatttacagccaaatctccgcttgacgaaaaaattccgatacgcgataaaatt
cagtgggtaaatccaaaagtggtgtgtcaggttaaattttcagaatggactcaagatcaa
catttaagacatcccgtttacctcggaattcgaattgataaaaaagcagaggaagttttt
ttatcattcccaaaagacgattcaactcaactaaattcagatgaaatgacaattacacca
gaaaataaaaaggaaaaaacagaaaacgattacgatttaaaagtcggaaaaacagttttg
catcttactaatcaaaacaaagtctatttcccaaaagacggcatcactaagggcgatatt
attcattattacaatgaagtttcagaattgattctgccttatttaaaagaccgtccagaa
tcaatgaaccgttttcctaacggaattgattcgccgagcttctatcagaaagatgttgat
gtagataaaattccgaaatggctcaaaaccaaaaaagtcttctcagaatctaataatgcc
gacatcgattatctcatctgtaataataaggaaacattgctttatatggcaaatttgggc
tgtatagaaatgaatccgtggaactcgacaaccaaacacattcagaatccagattggctg
gtaattgatttggatcctgcaggaaatgattttgctcctgtgataacaaccgctttggtg
gtgaaagaagttttagacgaattggaaaccgaatgtttatgtaaaacttcgggtgcttct
ggactgcatatctatattccgcttggcgcgaaatatgattatgattccataaaaattctt
ggcgaattaatagcaaaagaagtgcaatccagacttccagatattacttcaattgaaaga
agcatcaaaaagagaaaaaataaactgtacatcgatttcttgcaaaaccgacgtgggcaa
actttagcggccccgtattctgttcgaccaaaacctggcgcgacagtttctacgcctttg
gaatggagcgaagtgaatgaaaaactgcatccgtcgcaatttaccatcaaaaatgtcttg
aaacgttttgagaaaaaaggagatttgtggactcccgttttatcaaaaggagccgatatt
aaaaagattattcacaaactagaagaaaatcaaaacgtttaa

DBGET integrated database retrieval system