KEGG   Flavobacterium johnsoniae GSE09: BB050_03601Help
Entry
BB050_03601       CDS       T04718                                 

Gene name
ykoU
Definition
(GenBank) putative ATP-dependent DNA ligase YkoU
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
fjg  Flavobacterium johnsoniae GSE09
Pathway
fjg03030  DNA replication
fjg03410  Base excision repair
fjg03420  Nucleotide excision repair
fjg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fjg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BB050_03601 (ykoU)
   03410 Base excision repair
    BB050_03601 (ykoU)
   03420 Nucleotide excision repair
    BB050_03601 (ykoU)
   03430 Mismatch repair
    BB050_03601 (ykoU)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fjg03032]
    BB050_03601 (ykoU)
   03400 DNA repair and recombination proteins [BR:fjg03400]
    BB050_03601 (ykoU)
Enzymes [BR:fjg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BB050_03601 (ykoU)
    6.5.1.6  DNA ligase (ATP or NAD+)
     BB050_03601 (ykoU)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BB050_03601 (ykoU)
DNA replication proteins [BR:fjg03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BB050_03601 (ykoU)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BB050_03601 (ykoU)
DNA repair and recombination proteins [BR:fjg03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BB050_03601 (ykoU)
   NER (nucleotide excision repair)
    Other NER factors
     BB050_03601 (ykoU)
   MMR (mismatch exicision repair)
    Other MMR factors
     BB050_03601 (ykoU)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AOC96690
LinkDB All DBs
Position
complement(4248421..4250022)
Genome map
AA seq 533 aa AA seqDB search
MKNFAELIKTLDTSNKTSVKVDALTNYFLKASDEDKVWTIAILSHRRPPRPVNTTLLRLW
ANELANIPLWLFEESYHIVGDLAETIALVIPTTKEHSDKSLTEFLQEIIALKKKTDFEKK
EYLQTNWLNLNYYERFVFTKLITGSFRIGLSQKLMTRALSKAENIDEDTLAYKLMGDWNP
NTITFQELILDERNSDYLSKPYPFYLAYPIESELESLGNPEDWSAEHKWDGIRSQTIIRD
NEIYVWSRGEELVTDKYPEFQSFIGNIPDGTVIDGEILPFINNQIGTFNDLQTRIGRKNV
LASVLKNTPVIIKAYDLLEWQGNDIRNLPYEERRTLLEGLFTTLIGKEIPLQLSERFNFS
IWEDVTEERLKSREMRSEGLMLKRKDSPYLVGRKKGDWWKWKIEPLTIDAVLTYAMRGHG
RRSNLFTDYTFALWQENENKERELVTFAKAYSGLTDAEFRMVDDFIKKNTLERFGPVRSV
TPQLVFEIGFEGIALSKRHKSGVATRFPRILRWRHDKKIEDANSIEDLKNMIS
NT seq 1602 nt NT seq  +upstreamnt  +downstreamnt
atgaaaaattttgccgagcttataaaaaccttagatacttctaataaaacatcggtaaaa
gttgatgcgttgactaattattttttaaaggcaagtgacgaagacaaagtctggacaatt
gctattctttcgcatcgtcgtccgccacggcctgtcaacactaccttattgcgtttatgg
gcaaatgaattggccaatattccgctttggctatttgaagaaagttatcatattgtgggc
gatttggctgaaactattgcgttggttattccgactacaaaagagcattccgataaaagt
ctgaccgaatttctacaggaaataatcgccttaaaaaagaaaaccgatttcgagaaaaaa
gaatatctgcaaaccaattggcttaatttaaattattacgaaagattcgttttcacgaag
ttaataacgggaagtttcagaattggtttaagtcagaaactgatgacgcgagcactttct
aaagctgaaaatattgatgaagatacactagcttacaaattaatgggcgattggaatccg
aatacgattacgtttcaggaattgattttggatgaaagaaacagtgattatttatccaaa
ccttatccgttttatttggcttatccaattgaaagtgaactggaaagtttaggaaatcca
gaagattggagcgccgaacataaatgggacggaatacgatcgcagactattattcgtgat
aatgaaatctatgtttggagccgtggagaagaattggtaaccgataaatatccagaattt
caatctttcatcggaaatattccagacggaaccgttattgatggcgagattcttccattt
ataaacaatcaaattgggacatttaatgatttgcaaacccgaattggccgtaaaaatgta
ttagcttcggttttaaaaaatacgcctgttattattaaagcatatgatttattggaatgg
cagggaaatgatattcggaatctgccttacgaagaacgtcgtacattgttagaaggacta
tttacgactttaattggaaaagaaattccgctacaactatctgaaagatttaatttttct
atttgggaagacgtcacagaagaaagattaaagtcgcgcgaaatgagaagcgaaggtttg
atgctgaaacgaaaagattctccatatttagtcggaagaaaaaaaggcgattggtggaaa
tggaaaattgaacctttaactatagacgccgtcctcacctacgccatgcgcggacacgga
agacgatctaatttatttaccgattatacttttgccctttggcaggaaaatgaaaataaa
gaacgtgaactcgtcactttcgcaaaagcgtattccggtttaaccgatgccgaatttaga
atggtagacgatttcataaaaaagaatactttagaacgatttggtccagtaagaagcgtt
acgccacaattggtttttgaaattggtttcgaaggaattgcgctttccaaaagacataaa
agcggagttgcaacccgttttccgcgaattttaagatggagacatgataaaaaaattgaa
gatgccaattcgatagaagatttaaaaaatatgatttcataa

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