KEGG   Flavobacterium johnsoniae UW101: Fjoh_3303Help
Entry
Fjoh_3303         CDS       T00508                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fjo  Flavobacterium johnsoniae UW101
Pathway
fjo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fjo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Fjoh_3303
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fjo03400]
    Fjoh_3303
Enzymes [BR:fjo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Fjoh_3303
DNA repair and recombination proteins [BR:fjo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Fjoh_3303
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ABQ06319
UniProt: A5FEP5
LinkDB All DBs
Position
3945432..3947999
Genome map
AA seq 855 aa AA seqDB search
MPMSLSKYNEKRDFKQTREPKGKVEKSANELIFVVQKHAASHLHYDFRLEMNGVLKSWAV
PKGPSMDPEVKRLAMMVEDHPYSYKDFEGTIPAGNYGAGNVIVWDNGTYTSDEKTASDEK
QLLADLKKGRLSFVLKGKKLKGEFSLVKLHGKQENAWLLIKKQDKYASESDILEKDKSVI
SKRSLEELEKKSDKMTAKSEEKETKLKAIKKKPKAKTIKAEFIKPMLANTTEKPFDDEEW
IFENKYDGYRTIAVVNSDKTALFSRNKISFDINFKPIADELKKIDHTVVLDGEIVVENKS
GRADFQLLQNYLKTGIGNLKYYVFDLLNLDGNEVTELSLLDRKELLKILFNKYSFSNIFY
SEHTIANGIEQFEKARKNNSEGIIAKKADSSYTAGGRSNNWLKIKISNEEEAIIIGITEP
KNSRKYFGAILLGQYNGKNLQYIGKCGTGFTEAVLKELYTKLKPLFTDQSPLQEKVPLRD
TIQWVKPKLVCQVKYSEWTQDNNLRHPVYLGLRIDKKAQEVVFNGNDNTKTINHNQEKME
NLKEHTTENDYDLKIGKTILHLTNQNKIYFPQDGITKGDIIQYYNEAAPLMLPYLKDRPE
SMNRFPNGIDSPGFYQKDIDADKTPKWLKTKKIFSESNDADVNYLICNDKETLLYMANLG
CIEINPWNSTIKNISNPDWLVIDLDPAKEDDFKSVIETALVVKEVMDELQTECLCKTSGA
SGLHIYIPLGAQYDYDSIKILAELIAKEVHTRLPKTTSIERSIKKRKNKLYIDFLQNRRG
QTLAAPYSVRPQPGATVSTPLEWNEVNEKLHPSQFTIKNVLQRFEKKGDLWKPVLSKGAN
IKKIIKKLEEKQLEN
NT seq 2568 nt NT seq  +upstreamnt  +downstreamnt
atgcctatgtcactgtctaaatacaacgaaaagagagattttaagcaaacacgcgagcca
aaaggcaaggttgaaaaatcggccaatgaattgatttttgtcgttcaaaaacatgctgca
tcgcatttgcattatgattttagactggaaatgaacggcgttctcaaaagctgggcagtt
ccaaaaggtccttcaatggatcccgaagtaaaacgtcttgctatgatggtcgaagatcat
ccttacagttataaagattttgaaggaacaattccggccggaaactatggcgccggaaat
gtaattgtatgggataacggtacgtatacttctgacgaaaaaacagcttctgatgaaaaa
cagcttttagccgatcttaaaaaaggccgtctgagttttgtcttaaaaggaaaaaaactt
aaaggcgaattttcattggtaaaacttcatggaaaacaggaaaatgcctggcttttaatc
aaaaaacaggataaatatgcttcagaatcagatatattagaaaaagacaaatcggttatt
tctaaaagaagtctggaagaactggagaaaaaatcagataagatgaccgccaaatctgaa
gaaaaagaaaccaaactaaaagccataaaaaaaaagcctaaagcaaaaactataaaagcc
gaattcatcaaaccgatgcttgccaatactacagaaaaaccttttgatgacgaggaatgg
atttttgaaaataaatacgacggttaccgtacgattgctgttgttaactctgataaaaca
gcattattcagcagaaataaaatttcttttgatatcaattttaaacccattgcagacgaa
ttaaaaaaaatagatcataccgtagttctcgatggcgaaattgtagtggaaaataaatct
ggacgagccgattttcaactgcttcaaaactatttaaaaaccggaattggaaatttaaaa
tattatgtttttgatttactcaatttagacggaaatgaggtgacagaattgtctctcctc
gatcgaaaagaacttcttaaaattttatttaataaatattctttttcgaatattttctat
tctgaacatacaattgcaaatggaattgagcaatttgaaaaagcgcgaaaaaataacagc
gaaggaataattgccaaaaaagcagacagttcttataccgctggcggaagaagcaataac
tggctgaaaataaagatttctaacgaagaagaagccattattatcgggattacagaaccc
aaaaattcccgaaaatattttggcgcaattttgctgggtcaatacaacggtaaaaatctg
caatatatagggaaatgcggcactggatttaccgaagctgttttaaaagaactttatact
aaattaaaacctctttttacagatcaatcaccattgcaggaaaaagttcctttacgggat
actattcaatgggtaaagcccaaattagtctgtcaggtaaaatactctgaatggacgcag
gataacaatttaagacatccggtttatctgggattacgaattgacaaaaaagcccaagag
gttgtttttaatggaaatgacaacactaaaactataaatcacaatcaggaaaaaatggaa
aatttaaaagaacatacaactgaaaatgattacgatttaaaaattggaaaaacgatactc
catttaaccaatcaaaataaaatttatttcccgcaggacggaattacaaaaggcgatatt
attcaatattataatgaagccgcaccgttaatgctgccctatttaaaagaccgtccagaa
tcgatgaaccgttttcctaacggaattgattcgcctggtttttaccaaaaagatattgat
gccgacaaaactccaaaatggctgaaaaccaaaaaaatcttttcagaatcaaacgatgcc
gatgttaattatcttatttgtaatgataaagaaacgctgctttatatggcaaatttgggc
tgtattgaaatcaatccgtggaattccactataaaaaacatttcgaatccggattggctg
gtaatcgatttagatcctgcgaaagaagatgattttaaatctgtaatcgaaacagcatta
gtagttaaagaagttatggatgaattgcaaaccgagtgtttgtgcaaaacttccggagct
tcaggactgcatatttatataccgcttggcgcacaatacgactatgattctattaaaatc
ctggccgaattaattgcaaaagaagtacatacaagactgcctaaaactacttcaattgaa
cgaagcatcaagaaaagaaaaaataaattgtatatcgattttcttcaaaaccgaagagga
caaactttggccgcgccctactctgtccgcccgcaaccaggcgcaacagtttcgactccg
ttagaatggaatgaagtaaatgaaaaacttcatccgtcgcagtttacgataaaaaatgta
ttgcagcgttttgagaaaaagggtgatttatggaaacctgttttgtcaaaaggtgccaat
atcaaaaagattatcaagaaattagaggaaaaacaactggaaaattaa

DBGET integrated database retrieval system