Flavobacterium kingsejongi: FK004_05205
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Entry
FK004_05205 CDS
T05683
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fki
Flavobacterium kingsejongi
Pathway
fki03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FK004_05205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fki03400
]
FK004_05205
Enzymes [BR:
fki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FK004_05205
DNA repair and recombination proteins [BR:
fki03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FK004_05205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AWG24673
UniProt:
A0A2S1LLN8
LinkDB
All DBs
Position
complement(1239329..1242685)
Genome browser
AA seq
1118 aa
AA seq
DB search
MRKPNIHKKYDSSPKVNQIATEIAQRENKIHIKGLLGSSLSFVVQSLFGKSELPFLLVFQ
DKEEAAYYLNDLEQMVGEGDVLFYPSSYRRPYQIEDTDNANVLLRAEVLNRINSRKKPAV
IVTYPEALFEKVVTRKELDKNTLKVANNDKISIDFINEVLFEYQFKRVDFVTEPGEFSVR
GGIIDVFSFSNDNPYRIEFFGNEVDSIRSFDVETQLSVSKHNKITIIPNVENKFLQENRE
SFLNYISEKTVIFIENTDLLLSNLDRLFGKATEAFEKLAKEIKHLEPEELFLNQTSFIKK
ALDFTIVELGSKAIFRTRKSFEFHIQPQPSFNKQFDLLFNNLRENTQNGIMNYLFCSNEQ
QAKRFEDISETLDEDQHLTDRKHFKTLVFPLFQGFIDEEIQVACYTDHQIFERYHKFSIK
NGYSKKQTITLKELTTLSVGDYVTHIDHGIGRFGGLQKIQVEGKTQEAIKLVYADNDIVY
VSIHSLHKISKFNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKG
FKYAPDSYLQAELESSFIYEDTPDQLKSTQDVKADMESERPMDRLVCGDVGFGKTEVAIR
AAFKAVDNGKQVAILVPTTILAFQHYKTFTERLKDMPVTISYLNRFRSAKQKADTIRELA
EGKLDIVIGTHQLVNKNVIFKDLGLLIVDEEQKFGVNVKDKLKTIAQNVDTLTLTATPIP
RTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEEIIRDAVSYEIERGGQVYFINNRIE
NIKEVAGMIQRLVPGAKVGIGHGQMDGKKLEELMLAFMAGEFDVLVATTIIESGLDVPNA
NTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTEEARKRIQALEQFSELG
SGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIDELKENEFKDLYEEEES
NTPKEYVKDIQIDSDFELLFPDEYINNVSERLNLYNELSTIKNEEDLIAYENKLIDRFGP
LPKQAISLLNSIRIKWRATNMGIEKLVLKQGKMVGYFVSNQQSEYYQSNQFHKVLQFVQK
NPNLCRMKEKETKNGLRLLLTFDNVKSVRKALELLEMV
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaagcctaatatccataaaaaatacgacagttccccgaaagtaaaccagattgca
acagaaattgcgcaacgggaaaacaaaatccatatcaaagggcttttgggctcttcactt
tcttttgtcgtacaatcccttttcggcaaaagcgaactgccttttctgctggttttccag
gataaagaagaggctgcctattacctgaatgacctggaacaaatggttggagaaggagat
gttttattctatcccagctcctaccgccgcccttaccagattgaagatacggacaatgcg
aatgttttattgcgtgccgaagttttaaaccgcatcaactcccgcaaaaaaccagcagtt
attgtcacctatcctgaagcactcttcgaaaaagtagtgacccgtaaagaactggataaa
aacacgcttaaagtagccaataacgacaaaatatcgattgacttcatcaacgaagtcctt
tttgaatatcagtttaaacgcgtagattttgttaccgaacccggtgaattctcggttcgt
gggggtattatcgatgtcttttcattctccaatgacaatccttaccggattgaatttttc
gggaatgaagtcgacagcatccgtagttttgatgtagaaacgcagctttctgtttccaaa
cacaataagattaccattattcccaatgtagagaacaaattcctgcaggaaaaccgggaa
agcttcctgaattacatcagtgagaaaacagttattttcatagagaacaccgatttacta
ctgtccaatcttgatcggttgttcgggaaagctacggaagcctttgaaaaactggccaaa
gaaattaaacatttggaaccggaagaattattcctgaaccaaacttcttttataaaaaaa
gcactggattttacgattgtagagctgggctccaaagccatcttccgcacccggaaaagt
tttgaattccacatccagccccaaccgtcctttaataagcaattcgacctgctgtttaac
aacctcagggagaatacccagaatggcatcatgaattatttgttctgttccaacgagcaa
caggccaaacgttttgaggacatttcagaaacactggatgaagaccagcacttaaccgac
cgaaagcatttcaaaacccttgtctttccgctattccagggatttattgacgaagagata
caggtagcctgttataccgaccaccagatttttgagcgataccataaattcagcatcaaa
aatgggtattctaaaaaacaaaccatcacactcaaagagcttacaacactttctgtgggt
gattatgtcactcatatcgaccacggtatcggaagatttggaggattgcaaaaaatacag
gtcgaaggcaaaacccaggaagcgattaaactggtatatgccgataatgatattgtatat
gtcagcatccattcgctgcataagatttccaaattcaacggaaaagacggcacaccgcca
aagatttacaaactgggctctaatgcctggaaagtcctaaaacaaaaaaccaaagcaagg
gtcaaacatattgctttcaacctgatccaactctatgcaaaaaggcgactggaaaaagga
ttcaaatatgcgccggacagctacctgcaggctgaactggaaagttccttcatttatgaa
gacacgcctgatcagttaaaatccactcaggatgtaaaggccgatatggaaagcgaaagg
ccaatggaccgtttagtgtgtggagatgtaggctttggaaaaaccgaagttgccattcgt
gccgcgttcaaagctgtcgataacggcaagcaggttgccatactggtacctacaacaatc
ttggcttttcagcattataaaacatttacggaacggctaaaagacatgccggtgacgatt
tcctacctcaaccgcttccggtctgccaaacaaaaggccgatacgatacgggaattagca
gaaggcaaactcgatattgtcattggcacacaccaattggtcaataaaaatgtcatcttc
aaagacctcggattgcttatcgttgatgaggaacagaaattcggtgtgaatgtaaaagac
aagctaaaaacaattgcacaaaacgtcgatacgctcacccttaccgcaacacccatcccg
agaactttacagttttcactgatggctgcccgtgatttatcggttattaccaccccgcca
cccaaccgttaccctattgaaactaatgtcgtaggctttaacgaagaaatcatccgtgat
gccgtgtcttatgaaatcgaacggggcggtcaggtttattttatcaataaccgcatcgaa
aatattaaagaggtcgccggaatgatacagcgcctggttcccggtgccaaagttggtatt
gggcatggccagatggacggaaagaaactggaagaactgatgctggcttttatggctggt
gaatttgatgtactggtagccactaccattatcgaaagtgggctggacgtaccgaatgcc
aatacgattttcattaataatgccaataactttggactctcagacctgcaccagatgcgt
gggcgtgttggaagaagcaataaaaaagccttttgttacttcatctgccctccctattcg
gctatgactgaagaagcccgaaaaagaatacaggccctggaacaattcagcgaattggga
agcgggttcaatattgccatgaaggatttggaaatacggggcgcaggagatttgcttgga
ggcgaacaaagtggtttcatcaatgaaattgggtttgacacctatcaaaaaatcatgaat
gaggcgattgatgaactgaaagaaaatgaattcaaagacctgtatgaagaagaagagagc
aatacgccaaaagaatatgtaaaagacatccagatcgattctgattttgaattgttattc
ccggatgagtacatcaataatgtctcggaaaggctcaacctgtacaatgagttgagtacc
attaaaaatgaagaagaccttattgcttacgaaaataaacttattgaccgttttggccct
ttaccaaaacaagccatctccttattgaacagcattcgcatcaaatggcgcgctaccaat
atgggaattgaaaaactggtattgaaacaggggaaaatggtaggttattttgtctccaat
caacagagcgaatattaccagtcgaaccagtttcataaagtgctgcagtttgtacagaaa
aacccgaatctctgccgcatgaaagaaaaagaaaccaaaaacggactgcgcctgctcctg
acgtttgacaatgtaaaatccgtacggaaagcattggaattgctcgaaatggtatag
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