Flavisolibacter tropicus: SY85_15115
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Entry
SY85_15115 CDS
T04392
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
fla
Flavisolibacter tropicus
Pathway
fla02020
Two-component system
fla02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fla00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SY85_15115
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SY85_15115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fla03021
]
SY85_15115
Transcription machinery [BR:
fla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SY85_15115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
HTH_IclR
LacI
SF3b1
MarR
Glycos_trans_3N
CTD6
Motif
Other DBs
NCBI-ProteinID:
ANE53513
UniProt:
A0A172U3A4
LinkDB
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Position
3601676..3603172
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AA seq
498 aa
AA seq
DB search
MSLNQSLQQKLLQKLSPQQIQLMKLLQVPTANLEERIKEELEENPALEQSDDTHDENYNE
DTKDEFADSNEDEYGEDELSSDEQYDNIDISDYVSEGDDDIADYKLRDENYGEQEEKQTL
PYKVETSFYELLEAQLGMLKLDDQEYRIAEQIIGSVDEDGYLRRETSAIVDDLAFRQNIM
TTEEEVEALIKRIQRFDPPGVAARTLQECLILQLLRQKEEGKDVDVAIMALTKYFDEFTK
KHYEKIQRGLNLSDEELKDVMHQITKLNPKPGGNVGEVNKAESYVVPDFFIYNNAGKLEL
TLNSKNAPELRISEGYRDMLKEYDRGSKKDRRQKEAVLFIKQKIDAAKWFIDAIKQRQHT
LLSTMTAIMNHQYDFFLTGDETSLRPMILKDIAEKTGLDISTVSRVANSKFVQTEFGTYR
LKFFFSESLTTESGEEVSTREVKKILSDLIEGENKKKPLSDERLTELLQEKGYNIARRTV
AKYREQLNIPVARLRKEL
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaatcaaagtttacagcaaaagctgttacaaaaactgtcaccccagcagatt
cagttaatgaaactgttgcaagtacctactgcaaatctggaagagcggatcaaggaagaa
ttggaggagaaccctgcattggaacaatccgacgacactcacgacgaaaactataacgag
gatacaaaggacgagtttgcagatagtaatgaagatgaatatggtgaagatgaattaagt
tctgacgaacagtatgacaatattgacatctcggattatgtatctgagggggatgacgat
atagccgattataaactgcgcgacgaaaactacggcgagcaggaagagaaacaaacactt
ccttataaagtagaaacttctttttacgagctgctggaagcacagctcggcatgttaaag
ctagacgatcaggaatacagaatagccgaacagatcattggtagtgtggacgaggatggc
tacctgcgccgcgaaacatcggccattgtagatgatctggccttccgccaaaacatcatg
accactgaagaagaagtagaagccctgatcaagcgcattcaacgctttgacccgcccggc
gtagccgcccgcactttacaagagtgccttatcctgcagctgcttcgccaaaaagaagaa
ggaaaagatgtggatgtagccattatggcgttaaccaagtacttcgacgagtttaccaag
aagcactacgaaaaaatacagcgcggattgaacctgagtgatgaagaacttaaggacgtt
atgcaccagatcacaaagctcaaccctaaaccaggtggcaatgtgggcgaggtgaataag
gccgaaagctatgtagtgcccgacttctttatttataataacgctggtaaactggagttg
accctcaactccaaaaatgcaccggagctacgcatcagcgagggctaccgtgatatgttg
aaggagtatgatcgtggctctaaaaaagaccgtcggcagaaagaggctgtattatttatc
aagcaaaagattgacgctgctaaatggtttattgacgctatcaagcaacgccagcatacc
ctacttagcaccatgacggcgatcatgaatcatcagtacgattttttcctgactggggac
gagacctcattgaggcccatgatcctgaaagacattgccgagaaaacaggactggatatt
tccactgtaagccgcgtagccaacagcaagtttgtacaaacagagtttggtacctaccgc
ttaaaattcttcttctctgaatcccttactacagaaagtggtgaagaggtatctacccgc
gaggtgaagaagatcctaagcgacctgattgagggtgagaacaagaagaagccactgagc
gatgaacgtttaacagagcttttacaggagaaaggctacaatattgcccgccgtacagtt
gctaaataccgcgagcaattaaatatacctgtcgcccgtctgcgtaaggaactgtaa
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