Flavisolibacter tropicus: SY85_20040
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Entry
SY85_20040 CDS
T04392
Name
(GenBank) RNA 2',3'-cyclic phosphate--5'-hydroxyl ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fla
Flavisolibacter tropicus
Brite
KEGG Orthology (KO) [BR:
fla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fla03016
]
SY85_20040
Enzymes [BR:
fla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SY85_20040
Transfer RNA biogenesis [BR:
fla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SY85_20040
Prokaryotic type
tRNA splicing ligases
SY85_20040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANE52430
UniProt:
A0A172TZE0
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All DBs
Position
4687357..4688823
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AA seq
488 aa
AA seq
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MAKLKLTGKQLRNIGYPEGPVISIAMNIMEKSFRHLPEADALEILSSILQSPNQYAHDGV
LGKIAEALLPKPKVGGDEIPLMPKGIEFNVFGASGIEQGAMQQMNTAVKVPIAVAGALMP
DAHQGYGLPIGGVLATDNAVIPYGVGVDIGCRMCLSVFDIDPKELTAREQYFTRELNEAT
LFGSGSMFDKPFDHEIMERKEFDELGLLKGLQTRAWKQLGSSGSGNHFVEFGIVEISEQD
QVLNIPAGKYVGLLSHSGSRALGANIANHFTKVAKEKRRLPSEASNLAWLDLNEQEGMEY
WLAMNLAGDYASACHHVIHDKIARQLGRRPLKMVENHHNFAWKEQWEGKEVIVHRKGATP
AGKDVLGIIPGSMTAPGFIVKGKGEMASVNSAAHGAGRQMSRTVALKSITHNALNDMLAK
HGVKLLGGGLDEAPFAYKNIFEVMNAQKQLVDTVGLFYPKIVKMDGAMPKQWKKKNRDFQ
ESGDLMGE
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattaaaattaactggaaagcaattacggaacattgggtacccggaaggacct
gtgatcagtattgcaatgaatatcatggaaaaaagcttcaggcatctgccggaagccgat
gccttggaaatattaagtagtattttacaaagtcccaatcaatatgcccatgatggggta
ttgggaaaaatagcagaggctttattgccaaagccgaaagtgggtggcgatgagattcca
ttaatgccaaaaggtatagaatttaatgtctttggtgctagcggaattgagcagggcgca
atgcagcagatgaatacggcagtcaaggtaccgatagcggttgccggtgcgcttatgccc
gatgctcaccaaggttatggactaccgattgggggagttttagctacagacaatgcagta
ataccctatggagtaggagtagacattggctgtcgtatgtgcctgagcgtttttgatatc
gatccaaaagagctgaccgcgcgtgaacagtattttacccgggaattgaatgaggctaca
ctctttggtagtggttcaatgttcgataagccattcgatcatgaaataatggagcgaaaa
gagtttgatgagttaggcttgctaaaaggcttgcaaacccgggcttggaaacaattgggt
tcatcaggttcgggcaaccacttcgttgagtttggtattgttgaaataagtgaacaggat
caggtgttgaatatacctgctggtaaatatgttggattgttgtcacactctggatccaga
gccttaggcgccaatattgccaatcattttacaaaggtggctaaagaaaaacggcgactt
cctagcgaggctagcaatttagcctggttggatctaaacgaacaggaaggtatggaatat
tggctagccatgaacctggccggcgactatgcctctgcctgtcaccatgtaatacatgat
aagatcgcccggcagttgggaagacggccactgaagatggtagagaaccaccacaacttt
gcttggaaggagcaatgggaggggaaagaagtgatcgtgcaccgtaaaggcgctacgcct
gctggtaaagatgtgctgggtatcattcccggttctatgacagcccctggctttattgta
aaagggaaaggagaaatggcatcggtcaattctgccgcccatggagcaggtcgtcaaatg
agtcgtacggtagcactgaaatctattacccacaatgcgctaaatgacatgttagccaaa
cacggtgttaagcttttaggcggaggtctggatgaagcaccttttgcttataaaaacatt
tttgaagtcatgaatgcacagaagcagctggttgacacagtaggccttttctatcccaaa
atcgtaaaaatggacggcgccatgcctaagcaatggaaaaagaaaaaccgtgatttccag
gagtctggagacttaatgggtgaatga
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