Candidatus Fluviicola riflensis: CHH17_10700
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Entry
CHH17_10700 CDS
T05019
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
flu
Candidatus Fluviicola riflensis
Pathway
flu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
flu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHH17_10700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
flu03019
]
CHH17_10700
03009 Ribosome biogenesis [BR:
flu03009
]
CHH17_10700
Enzymes [BR:
flu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHH17_10700
Messenger RNA biogenesis [BR:
flu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHH17_10700
Ribosome biogenesis [BR:
flu03009
]
Prokaryotic type
rRNA helicases
CHH17_10700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
ASS49189
LinkDB
All DBs
Position
complement(2494411..2495514)
Genome browser
AA seq
367 aa
AA seq
DB search
MKTSHAILPSILKRLEELNYTQPTPIQEHAWKYLIPKHQDYVGQAHTGSGKTIAYGVPLL
QRIDAKDRDVQAVVLVPTRELVNQTAKTLFKLSKHIDKVFIEGILGGEQIEVQQARLRRP
THIIVATPGRLWELIQLKAVKLDRVKTIVLDEADELYAKGFMKEVDKILGATNDFHKKWL
FSATIHGELTGWIRKQLSTDAPKASIATKKVMNPKIEHQYLECLKDEKPAMLIEFLSSQG
KARGIIFCRTKGDVQFVSKLLQSNDYKTAEIFGELNMKEREKAIRMFHNQAFQYIVATDI
AARGIDFDSLSFVVHYQLPDDPDYYTHRSGRTARAGKRGISLSFVEPVERKKLRYIQELL
DVDFIQL
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgtcacatgcaattttaccaagtatcttgaaacgcctggaagagttgaattat
actcagccgaccccgattcaggagcacgcatggaaatatctcattccaaaacaccaggat
tatgtaggacaagcgcataccggttcgggtaaaacaattgcctatggtgttccactcttg
cagcgtattgatgccaaagaccgtgatgtgcaggcggttgtgctggttccgacccgcgaa
ttggtgaatcaaacggcgaaaacgttatttaagctcagtaaacatatcgacaaagtattt
atagaaggaattttgggtggtgagcaaatcgaagtgcaacaagcgcgattacgccggcca
acccatattatcgtagcaactccgggccgtttgtgggaactcattcagctcaaagccgtg
aaactggaccgcgtaaaaaccattgtactcgatgaggccgatgagttgtacgccaaaggt
tttatgaaagaagttgacaagattttgggcgcgaccaatgattttcataaaaaatggttg
ttttcagccacgattcacggagaactcaccggctggattcgtaaacaactttctactgat
gctccgaaagccagcatcgctaccaaaaaagtgatgaatccgaaaattgagcatcaatac
ctcgaatgcctgaaggatgaaaaaccggccatgctgattgagtttttgtcgtcgcaggga
aaagcgcgtggcattattttctgccgcaccaaaggcgatgtgcagtttgtttcgaagtta
ttgcagtccaacgactacaaaacagcggagattttcggtgaattgaatatgaaggaacgc
gaaaaagccattcgcatgtttcacaaccaggcctttcaatacatcgtagctacagatatt
gctgctcgcgggatcgactttgatagcctcagttttgtagtgcattaccagttgcctgat
gatcctgattattatacgcaccgcagcggaagaactgccagagctggaaagcgaggaatt
tcactgagtttcgtggaaccggtagaacgaaaaaaactgcgttacattcaggaattgctg
gatgtggattttattcaattgtaa
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