KEGG   Fomitiporia mediterranea: FOMMEDRAFT_140858Help
Entry
FOMMEDRAFT_140858 CDS       T03132                                 

Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03030  DNA replication
fme03410  Base excision repair
fme03420  Nucleotide excision repair
fme03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FOMMEDRAFT_140858
   03410 Base excision repair
    FOMMEDRAFT_140858
   03420 Nucleotide excision repair
    FOMMEDRAFT_140858
   03430 Mismatch repair
    FOMMEDRAFT_140858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fme03032]
    FOMMEDRAFT_140858
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_140858
Enzymes [BR:fme01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FOMMEDRAFT_140858
    6.5.1.6  DNA ligase (ATP or NAD+)
     FOMMEDRAFT_140858
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     FOMMEDRAFT_140858
DNA replication proteins [BR:fme03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    FOMMEDRAFT_140858
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     FOMMEDRAFT_140858
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FOMMEDRAFT_140858
   NER (nucleotide excision repair)
    Other NER factors
     FOMMEDRAFT_140858
   MMR (mismatch excision repair)
    Other MMR factors
     FOMMEDRAFT_140858
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 18672552
NCBI-ProteinID: XP_007266835
JGI: Fomme1_140858
LinkDB All DBs
Position
Unknown
AA seq 848 aa AA seqDB search
MESPDSIMRPSSSNVTVEDDEAFALGLAAAEGINLETLRTLEQKWKTSQTTPSIKQPSRE
VIDVDAADNVSKITTEVADRDGVRNSPRQASHGAKPVSNANFSSEVHGLPLETESLPNLA
EDPLCLSVMQNPWADKPTSAPEPAPYSFLAHTLCSLSGTRSRISIYNILTNALRFIIYHD
PSALLPALYLLSNSLAPPYTSIELGLGPSTISSAIQHVSGLTPAALKRLYTKSGDAGDVA
FEAKSKLRTLIPHASLTVTGVYSSLLKICYAKGAGATKQRQSIAEKLLLSAKGEEIRYLV
RTMSQHIRVGAVRTSILTALARALVLTRPANCQKFPPDDSPYFVSPQSLALIKAASGEAK
KKAKEDPLREKIMVKFSAAEGLVKRVYVQHPNFDHIAKALLEGGPEELAEKVTLTVGLPL
HHTLGSPTRSLDEVYDRLGNLPFTAEFKYDGQRAQIHARKNEDGDLFVRIFSRHLEEMTD
KYPDIVALVEEMFRSSSLLRSFIIDTEIVAIDAVDGSLRTFQELSNRARKDVRLEDVKIK
VCVYAFDLMFLNEESLLEQPFRLRRQKLRSYFPPIHPSSPFISKFDHVECCESEEGREAV
EEFWQKAVDGRSEGLMIKLLDSREVDEDPNGAKTKQRKKPLPATYEPDKRTLAWLKLKKD
YVLGLGDSLDLVPIGAWHGNGRKAAWWSPILLAVWDEGSGQLVGVCKCMSGFTDEFYKSL
QERYAEGSEACSRTSLWNVNSGGYSPEVYFKPQEVWEIRGADITLSPVSVAALGLVSQDR
GLSLRFPRFMRVRDDKAITDANTPEFLASMWHKQESRGRDTGGMDDGDLIDASPEVSEGE
EDDDDEDG
NT seq 2547 nt NT seq  +upstreamnt  +downstreamnt
atggaatcacctgacagtattatgcgcccatcctcttccaatgtaacagttgaagatgac
gaggcctttgcgctgggccttgctgctgcagagggtattaacctcgaaactttgaggaca
ctggaacagaaatggaagacaagccaaactacaccatcaattaagcaaccttctcgtgaa
gtcatcgacgtcgacgctgcagataatgtttcaaagatcaccacggaggtcgcagaccgg
gacggcgttaggaattcgcctcgtcaagcatctcatggggcaaaacctgtatccaatgct
aatttttcgtctgaggttcacggattacctcttgagactgagtcacttccgaatctggcg
gaagatccactgtgtctttctgtcatgcagaatccctgggcagacaagccaacctctgcg
ccggaaccagctccttattcgttcctagcacacacactatgctctctttctggcacaaga
tctcgcatttccatctataacatcctcacgaacgcattgagattcattatctaccacgat
ccatctgcgctacttcccgcgctttaccttctttctaattcgctagcaccgccatacact
tctattgaactcggtctcggaccgtcaactatttcgagtgcgatccagcatgtttcgggc
cttacccctgcagctttgaaacggttgtatacaaagtccggggatgcgggggatgtagca
ttcgaggcaaagtcgaaactgaggactctcatacctcacgcctcgcttactgtgacgggc
gtctacagttccttgctaaaaatttgttatgcaaaaggagcgggagcgacaaaacaaagg
cagtctattgcggaaaaactccttctatcggctaaaggcgaagaaatacgctaccttgtc
cgcacgatgtcacaacatatcagggttggtgccgttaggacttcaatcctcaccgcccta
gcccgtgctttggtcctcacccgaccggctaactgccagaagtttcctcctgatgattca
ccatatttcgtgtcacctcagtctcttgcacttatcaaagccgcttctggagaagctaag
aagaaagccaaagaagatccgttgagggagaagattatggttaagttcagtgctgccgaa
ggcttggtgaagcgtgtttatgtgcagcatccaaactttgaccatattgccaaagccctt
ttggaaggtggccccgaagagctagccgagaaagtaaccttgacagtcggattaccgctg
caccatacattgggttctccgacccgctctctggatgaggtatacgatcgtctcggcaat
ctgccgttcactgcagaattcaaatacgacggacaaagagcgcagatccacgcacggaaa
aacgaagatggcgatcttttcgtccggatattctcccgacatttggaggaaatgaccgat
aagtacccggacatagtcgctcttgtagaagaaatgtttagatcatccagcctgttgaga
tctttcatcattgacacggaaatagtcgcaattgatgccgtagatggttcgttaaggact
ttccaggaactctctaatcgtgctcggaaggacgttcggctcgaagatgtgaagataaaa
gtctgcgtatatgcattcgatctcatgttcctcaatgaagagagtctacttgagcagccc
ttccgtttacgtcggcagaagcttaggtcttactttccgcctattcatcctagctcccct
tttatttctaaatttgaccatgtcgaatgctgcgaaagcgaggaaggacgggaggcagtg
gaagaattctggcagaaggcggtggatggtcgttcagagggactgatgatcaagcttctt
gatagccgagaagtcgatgaagatcccaatggtgcgaagacgaagcaacgaaagaagcct
cttccagctacgtatgaaccagacaagcggacactggcgtggctcaaattgaaaaaggac
tatgtcctcgggctgggcgatagtctcgacttggttccgataggtgcgtggcatgggaat
gggcgaaaagctgcatggtggagtccgatcctcctcgctgtttgggacgaaggatcaggg
caacttgtgggagtttgcaaatgcatgtcaggattcacggatgaattctataagtctctg
caagagcgctatgcagaaggttctgaagcctgttctcgcacgtcactttggaatgtcaac
tcgggaggctattcaccagaagtgtatttcaaacctcaagaagtctgggaaatacgagga
gcagatatcactttaagtccagtgtcggtggcagctcttggtcttgtgtcccaagatagg
ggactgagcttacgcttccctcgatttatgcgtgtcagggacgacaaggccataacggat
gccaataccccagagttcttggcttcgatgtggcacaagcaagaaagtcgagggagggat
actggtgggatggacgacggtgacctcattgatgcgtcgcccgaagtgagcgagggagaa
gaggacgacgacgacgaagacggatga

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