KEGG   Fomitiporia mediterranea: FOMMEDRAFT_155252Help
Entry
FOMMEDRAFT_155252 CDS       T03132                                 

Definition
(RefSeq) DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
fme  Fomitiporia mediterranea
Pathway
fme03030  DNA replication
fme03410  Base excision repair
fme03420  Nucleotide excision repair
fme03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:fme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FOMMEDRAFT_155252
   03410 Base excision repair
    FOMMEDRAFT_155252
   03420 Nucleotide excision repair
    FOMMEDRAFT_155252
   03430 Mismatch repair
    FOMMEDRAFT_155252
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fme03032]
    FOMMEDRAFT_155252
   03400 DNA repair and recombination proteins [BR:fme03400]
    FOMMEDRAFT_155252
Enzymes [BR:fme01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FOMMEDRAFT_155252
    6.5.1.6  DNA ligase (ATP or NAD+)
     FOMMEDRAFT_155252
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     FOMMEDRAFT_155252
DNA replication proteins [BR:fme03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    FOMMEDRAFT_155252
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     FOMMEDRAFT_155252
DNA repair and recombination proteins [BR:fme03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     FOMMEDRAFT_155252
   NER (nucleotide excision repair)
    Other NER factors
     FOMMEDRAFT_155252
   MMR (mismatch exicision repair)
    Other MMR factors
     FOMMEDRAFT_155252
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Salp15
Motif
Other DBs
NCBI-GeneID: 18674457
NCBI-ProteinID: XP_007265728
JGI: Fomme1_155252
LinkDB All DBs
Position
Unknown
AA seq 849 aa AA seqDB search
MFAVKRVSYRVLTRMGRQQTLGKFFDMPKGIKSAPPQQASLNELWRGKGKKPRSEDVSVE
PLVAPKAESENMETDDPPENASRNNHTSSSLPGTPPKSSPKSSPRSSPKQVDQDVRPSKK
RRVVESDNESGTEGQTTLKRLAKGSKKSKAAQIPEESDSIVAEEPPATSEADEIGEEEVE
EEDVENVEEKAVAYKSAQWAISRVEEVDIEGGWKSGDPVPYAALAKAFSLIEATTKRIEK
TTLLTALLLLVMRRSAPGDYKSLLQTVYLCINRLSPDYVGIELGIGESILIKAIGESTGR
GLSVIKADLKREGDLGLVAMTSKNSQKTIFKPKRLTVPYVFSNLREIALSSGHSSQAKKV
SIITKLLAACQEHEAKYIVRSLEGKLRIGNAERSVVVALAHAVVLHEKEKAGKKWSQEKL
VSRLEQGANILKSVYSELPSYDEVIPAIVESGIEHLREKCKLKPGVPLKPMLAKPTKAIG
EVLDRCEGKKFTCEYKYDGERAQVHKLEDGTVAVFSRNSEDMSKKYPDLVEQLPHCVKDT
AKTFVLDCEAVAFDIKEDKLMPFQELSKRKRKDVKVEDIQVRVCLFAFDLLYLNGEPLLQ
KPLSERRQILREHFQPVHGEFDFAKSSDGETTEAIQAFLEESVKDGCEGLMIKMLETEAS
YYEPSKRSVNWLKLKKDYLAGVGDSLDLVVVGAYYGKGKRTNVYGAFLLACYDPDSEEYQ
TICKIGTGFSEEALQAHYTTLKPLENEKPRGDIKVGGAKPDVWFDPKVVWEVLTADLSLS
PIYTAAQGLVEERGISLRFPRFIRIRDDKSADDATGPEQIAEMYERQSLAQTKGAKKRRG
GEDAEDDFW
NT seq 2550 nt NT seq  +upstreamnt  +downstreamnt
atgttcgcagtcaaacgcgtctcctaccgtgtcttgacgcgcatgggacgtcagcaaacc
ttaggaaagttcttcgacatgccgaaaggtatcaaatccgctccaccgcagcaggccagt
ctgaatgagctatggcgtggcaagggcaagaaacctagaagcgaggacgtgtcggtcgag
ccattagttgcgccgaaggctgaatctgagaacatggaaaccgatgatccaccggaaaac
gcttcacgaaataaccatacctcttcgtccttgcccggaacacctcccaaatcctctccc
aaatcctctcctcgatcctcgccgaagcaagtcgaccaggacgttcgtccatccaagaaa
aggagggtcgttgagtcggacaatgagtcaggtaccgagggtcaaactactttgaagaga
ctagccaagggttcaaagaaatcgaaagctgctcaaattcccgaggaaagtgattctatc
gttgctgaggagccccctgcgacaagcgaagctgacgaaattggagaagaggaagtggag
gaggaagatgtggagaatgtcgaggagaaagcggttgcatataagagcgctcagtgggct
atctcaagggtcgaggaagtcgatattgagggtggctggaaatctggcgatcccgttccg
tacgcagcgctggccaaagcgttctccctaattgaggcaacaacgaaacggatagagaag
acgacgcttcttacagcgttattacttctcgtcatgcgccggagcgccccaggagattac
aaatcactgctgcaaactgtatatctatgcattaacaggttaagtcccgattatgtcggg
atcgaactgggtattggcgaaagcatcttaatcaaggctatcggcgaatctactggacgt
ggcctgtccgtcatcaaagctgatcttaagagggaaggtgatctaggactcgttgctatg
acctccaagaacagtcagaaaactatcttcaagcccaagcgacttacggtcccatatgtt
ttctccaacctccgtgaaattgccttgagttctggacattcgtctcaggcaaagaaggtg
tctattattacgaaactacttgcagcttgtcaagaacacgaggcgaagtatatcgtccgt
agtttggaggggaaattgcgaattggaaatgccgagcgatcagtagtcgttgccctagcc
cacgctgttgtccttcacgagaaggagaaagctggcaagaaatggagccaggagaaactc
gtgagccgtctcgaacaaggcgccaacatcctgaagtccgtctacagcgaattgccttca
tatgatgaagtcatcccagccattgttgagtctggcatagagcacttgcgagaaaagtgc
aagcttaaaccgggagtgcccctcaagcctatgttggcaaaaccgacaaaagcgattggt
gaagtacttgaccgctgtgagggcaagaagtttacatgcgaatacaaatatgatggagag
cgagctcaggtccataaactcgaggatggtaccgttgccgtcttcagcagaaattcagag
gatatgagcaagaaatatcccgatctcgtcgaacagttgcctcattgcgtgaaagacaca
gccaagacttttgtccttgattgcgaagctgttgcattcgacataaaagaagacaagtta
atgccgttccaagagctaagcaagcgaaaacgaaaggatgtcaaggtggaggatattcaa
gtcagggtctgccttttcgcattcgacttgctctatcttaacggagagcctttattgcaa
aaacctctttcagaacgtcgtcagatcctgcgggaacacttccagcctgtacacggagag
tttgacttcgcgaaatcttccgacggagaaacgacggaagcaattcaggcattcctggag
gaaagtgtcaaggacgggtgcgagggtttgatgatcaagatgcttgagacagaggcgagc
tactacgaacctagtaaacggagtgtcaactggctcaagctaaagaaagattatcttgcc
ggagtcggggactcacttgatcttgtcgtcgtcggggcatactatggaaaaggcaagcgg
actaacgtatacggcgcattcctcttggcctgctacgatcccgactcggaagaatatcag
acgatatgcaagataggaacaggattcagcgaagaggcacttcaagcacactatactaca
ctcaagccactagagaatgagaagccgaggggtgacattaaagttggcggagcaaagcca
gacgtctggtttgacccgaaagtcgtctgggaggtgctcacggccgatttgagtttaagt
ccgatatacactgctgctcagggattggtggaagaacgcgggatttccctgcgatttccc
cgatttattagaatacgagatgacaagtccgcagatgacgcgactggtccggagcagatt
gccgaaatgtacgagcgacagagtcttgcccaaacgaagggagcgaagaagagacgtggc
ggagaagacgcagaagacgatttttggtag

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