Fusobacterium vincentii 3_1_36A2: HMPREF0946_00133
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Entry
HMPREF0946_00133 CDS
T02822
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fnc
Fusobacterium vincentii 3_1_36A2
Pathway
fnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0946_00133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fnc03019
]
HMPREF0946_00133
03016 Transfer RNA biogenesis [BR:
fnc03016
]
HMPREF0946_00133
Enzymes [BR:
fnc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HMPREF0946_00133
Messenger RNA biogenesis [BR:
fnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0946_00133
Transfer RNA biogenesis [BR:
fnc03016
]
Prokaryotic type
tRNA degradation factors
HMPREF0946_00133
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
EEU32060
UniProt:
C7XMB3
LinkDB
All DBs
Position
856358..858463
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AA seq
701 aa
AA seq
DB search
MNLEKDLEKVKELLKDVKYLTFEQISSFLDWTEQNKKDYKAILMSWVDSGDLILSKKNRF
SLPENLGYVKGIFRIIKNRFAFVDREDSEEKEGIFIPKEEFNNALDGDTVLVELTEKKRN
DKGAEGRVVKIIERRKNIVVGILERSKDFAFVIPTGSFGKDIYIPNSQIKNAANKDLVAV
EITFWGDNSRKPEGKVIKILGSSTNSKNMIEALIYREGLSEKFSNEAMQQTNSIIANSKI
DYTKRKDLTNLSIITIDGADAKDLDDAVYVEKLENGNYKLIVAIADVSYYVKKDTVLDLE
ARNRGNSVYLVDRVLPMFPKEISNGICSLNEKEEKLTFSCEMEIDLKGKVVNYEVYKSVI
RSVHRMTYKAVNGILDGDKNLINEYSDIYEMLKQMLELSKILRAKKHIRGSIDFELPELK
VVLDKDEKVEKVYLKDRGEGEKIIEDFMIAANETVAERIFWLELASIYRTHEKPDREKIV
KLNEILSKFGYKIPNFDNIHPKQFQEIIERSRNKETSMLVHKTILTSLKQARYTVEDIGH
FGLASSHYTHFTSPIRRYADLMIHRVLFSTIDNSIKPFKEVDLDEIAQHISKTERVAMKA
EDESVRIKLVEYMQKRVGEKLTVMVTGFAPRKVFFETDEHIECSWDVTISPNYYVFDEEN
YCMVDRESDTVFNLGDKVEAVLERADLLTLEISVKPLKDIF
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagaaaaagatttagaaaaagtaaaagaacttttaaaggatgtcaaatactta
acttttgagcaaatttcaagttttcttgattggacagaacaaaataaaaaagattataaa
gccatacttatgtcttgggttgattcaggagatttaattttgagtaaaaaaaatagattt
tcattgccagaaaatttaggttatgtgaaaggaatttttagaattataaaaaatagattc
gcctttgttgatagagaagattcagaggaaaaagaaggaatatttattccaaaagaagaa
tttaataatgccttagatggagatacagttttagtggaattaacagaaaagaagagaaat
gataaaggagcagaaggtagagttgtaaagataattgaaagaagaaaaaatatagttgta
gggattttagaaagaagcaaggattttgcctttgtcataccaacaggctcatttggaaag
gatatttatataccaaattctcaaattaaaaatgcagctaataaagatttagttgctgtt
gaaataacattttggggtgataatagtagaaaaccagagggcaaggttataaaaatttta
ggttcatcaacaaatagtaaaaatatgatagaagctctaatttacagagaaggtctaagt
gaaaaattctcaaatgaagcaatgcaacaaaccaattctatcatagcaaattctaaaata
gattatacaaagagaaaagatttaacaaatttatctataataacaatagatggagcagat
gcaaaggacttagatgatgccgtctatgttgaaaaattagaaaatggaaactataagttg
atagttgcaatagcagatgtttcatactatgtgaaaaaagatacagttcttgacttagaa
gcaagaaatagaggaaattctgtttatttagtggatagagttttaccaatgtttccaaag
gaaatttcaaatggtatttgttctttaaatgaaaaagaagagaaattaaccttttcttgt
gaaatggaaatagatttaaaaggtaaagttgtaaattatgaagtatataaatcagtcata
agatctgtccatagaatgacttataaagctgtgaatgggattttagatggagataagaat
ttaataaatgaatattcagatatttacgaaatgttaaaacaaatgcttgaattatctaag
atattaagagctaagaaacatataaggggaagtattgattttgagcttcctgaattaaaa
gttgttttagataaagatgaaaaagttgaaaaagtatatttgaaagatagaggagaagga
gaaaaaatcattgaggactttatgatagcagccaatgaaactgttgcagaaagaatattt
tggttagaacttgcctcaatttatagaactcatgaaaaacctgatagagaaaaaatagtt
aaattaaatgaaatattatcaaaatttggatataagataccaaactttgataatattcat
cctaaacaatttcaagaaattattgaaagatctaggaataaagaaacaagtatgttagtc
cataaaactatattgacatctttaaaacaagcaagatatacagttgaagatataggacac
tttggattagcttcttcacattatacacattttacttctcctataagaagatatgctgat
ttaatgattcatagagtattattttcaacaatagataattctataaaaccatttaaagaa
gtagatttagatgaaatagcacaacatatttctaaaacagaaagagtagctatgaaagca
gaagatgaaagtgtgagaataaaacttgttgaatatatgcaaaaaagagttggagaaaaa
cttactgttatggttactggttttgcacctagaaaagtgttttttgaaactgatgagcat
atagaatgtagttgggatgttacaatttcacctaattactatgtatttgatgaagaaaat
tattgtatggtagacagagaaagtgatacagtctttaatttaggagataaagttgaggct
gttttagaaagagcagatttattaaccttagaaatttctgtaaagccattaaaagatata
ttttaa
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