Francisella opportunistica: CGC45_05325
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Entry
CGC45_05325 CDS
T06355
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
foo
Francisella opportunistica
Pathway
foo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
foo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGC45_05325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
foo03400
]
CGC45_05325 (mfd)
Enzymes [BR:
foo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGC45_05325 (mfd)
DNA repair and recombination proteins [BR:
foo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CGC45_05325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Glyco_tran_WecG
DUF5342
Motif
Other DBs
NCBI-ProteinID:
AXH33329
UniProt:
A0A345JRU3
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All DBs
Position
1078239..1081661
Genome browser
AA seq
1140 aa
AA seq
DB search
MLNNQISAKDTIVSNAYGSAFSILFNEYLKQNNEFNIIVTEDSQQAHKIYKELKYLNKDK
SKIEILFFPNLEILPYDRFSAAVDIISRRQEILHKMTHRPKNTLIITSISNTLRKLAPVS
FIKEHSFILKTGDRLDISKYKMLLTEAGYTLVNNVFEKSEFSIRGSIIDIYPIGSKIAFR
IDLFDDEVDSIKELNTETQRSGNEIQSINIMPSHELVYNHQNTAFALGKLERLCGEKALN
STIATYIQNNEYFSGIEFYLPLFYDKLTSLYEYLPQSTNIHLVDNINNSIEAFSEEVKFR
YNELKHDSDRPILPYQEIFYSQKEIKGIYEQYKNIKWFQQPKSKSKTLKVDHLEKVSANY
KLANPFRDLQQLLDKSNFDKVIFSTDSNGRAEVLLEHLSKLDLNIQSCKSFSEALKVTGK
FCLIVSPFQEGVIIDKKIVLITEADLFPEHTYNASKVSQHDYHPTIDLKDLTDLKPGMHV
VHIDHGIGRYEGLESVELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLNEKIALN
KLGTDKWKKQKEKTIKKIIDIAANLLEIYAKREMRQGFSNSLNEEEYLRFCADFPYEETP
DQLLAINDVFKDMIATKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQ
QHYNSFKDRFANTAVNIEVITRSKTPKAQQQLFENLKKGSVDIIIGTHKLISSKIDFKNL
GLLIIDEEHRFGVAQKEKLKALKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKR
LSVKTFVKEYDNNIIREAVSRETIRGGQVFYLYNKVETIQKKKEILQELFPRLRIAIAHG
QMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRV
GRSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQ
SGNIDGIGLNLYIDLLDKTIANLKAGKELNIEEVINSTICEVELNIPTLIPDYYINDVNT
RLNIYKRISKANHKELVNIKIELIDRFGKLPLEVLYLLKVAHIKIDAIALGIAQIKMFAT
SGKISFSNSAKFEPQKLIKLIQSQPADFRLTKEQDLLIIKATKTAEQRIEFVENFLKKIA
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgcttaataaccagatatctgctaaagatactattgtatctaatgcttatggctctgct
tttagtattttgtttaatgaatacctcaagcaaaataacgagtttaatataatagttact
gaagattcacaacaggcgcataaaatatacaaagaattaaaatatctcaataaagataaa
tcaaagatagagattttattttttccaaacttagaaattctcccttatgatagattctca
gctgctgtagatatcatctctagacgccaagagattctacataaaatgacacatcgacca
aaaaatactctaataatcacgagtatatcaaatacactaagaaaacttgctccagtaagc
tttataaaagagcatagttttatactcaagacaggtgatagattagatatcagcaaatat
aaaatgctccttacagaagcaggttataccttagtaaacaatgtttttgagaaaagtgaa
tttagtattcgtggtagtattatcgatatataccctatcggctcaaaaattgcttttcgg
atagatctttttgatgatgaggttgatagtatcaaagagctcaatactgaaacacaacgc
tctggtaatgaaatacaatctatcaacattatgccatcacatgagctagtatataaccat
caaaatactgcttttgctttaggtaaacttgagagattatgtggtgagaaagctcttaat
tcaacaattgcaacatatatacaaaataacgaatatttcagtgggattgagttttattta
cctttgttttatgacaagcttaccagtctttatgaatatctaccacaatcaacaaatatt
cacttagttgataatattaataattcgattgaggctttttctgaagaagtaaaatttagg
tataatgagcttaagcatgatagtgatagaccaatcctaccttaccaagagattttttac
tcacaaaaagagataaaaggtatttatgagcaatacaaaaatatcaaatggtttcagcag
ccaaaatcgaaatctaaaacactcaaagtagatcatttagaaaaggtttctgcaaactac
aagctggcaaatccatttagagatttacagcaacttcttgataaatctaacttcgataaa
gttattttctcaactgattcaaatggacgcgctgaagtacttctagagcatttaagtaag
cttgatctaaatatacaaagctgtaaaagctttagtgaggctctaaaagtaactggtaaa
ttctgcctaatagtttcaccttttcaagaaggtgtaattatagataaaaagatagttcta
attacagaagcagatttattccctgagcatacttataatgcctccaaagtttcacagcat
gattaccatcctactattgatcttaaagatctaacagatttaaaaccaggaatgcatgtt
gtgcatattgatcatggtataggtagatatgaaggtttagaaagtgttgaactaaatggc
aaaaaagatgaatttatattgctcagatatgcaaatgacgccaaaatctatgtgcctata
acgtcattaaatctaatctctatttataattcttcactcaatgaaaaaatagcactaaat
aagcttggtacagataaatggaaaaagcaaaaagaaaaaactatcaaaaagatcattgat
atagcagcaaatcttctagaaatttatgcaaaaagagaaatgcgccaaggttttagcaat
agcttaaatgaggaggaatatctgagattttgtgcagattttccttatgaagaaactcct
gatcagcttttagctattaatgatgtatttaaagatatgattgcaactaaacctatggat
agactaatctgtggtgacgttggttttggtaagacagagatcgcgatgcgtgcagctttt
ctagccacacaaaatcaaaaacaagtagcaatcttagtacctacaacaattttagcccaa
caacattacaatagtttcaaagatagatttgccaataccgctgttaatatcgaagtaatt
actcgctcaaaaacgccaaaagctcagcaacaactttttgaaaaccttaaaaaaggtagt
gtagatataattattggcacccataaactaatttcatcaaaaattgattttaaaaaccta
ggtttactaattattgatgaggaacatcgttttggcgttgcacaaaaagaaaagttaaaa
gctctaaaagccgaaatagatattttgactatgtctgcaacccctattccacgtagttta
agtatggcattctccgcattaagagacctatcaattatcgcttcaccgcctgcaaaacgc
ttatcagttaaaacttttgtcaaagaatatgataataatataattcgtgaagctgtaagt
cgtgagactattcgtggtggacaagttttttatctttataataaagttgagactattcaa
aagaaaaaagaaattcttcaagaattattcccgcgcctaaggatagctatagctcatgga
caaatgagcgaaaaagaaatccagaaagttatgtttgattttaaacataataagtatcac
atattactatgtactacaattattgaaactggcatagatataccaaatgcaaatacttta
attatagaagatgctaataacttaggtttagctcaacttcaccaactaagaggtagagtt
ggacgttcacatcaccaagcttacgcatatatgctgatacctaatgaagcaagtatcacc
aaagatgcgctaaaaaggcttgaagctattagcaacactgaatcattaggaggtggtttt
accttagctaatcatgatttagaaattcgtggtgcgggtgaaatacttggagaggaacaa
agtggtaatatcgatggtattggtctgaatctatatattgatttacttgataaaactatt
gcaaatctaaaagctggtaaagaacttaatattgaagaggttattaactctacaatctgc
gaagttgagttaaatattccaacactaattcctgattattatattaatgatgtcaatacc
cgtttgaacatctataaacgcatctccaaagctaatcacaaagagctagttaatatcaag
attgagctaattgatcgctttggtaaactacctttagaagttctttatctactaaaagta
gcacatataaaaatagatgcaatagcactaggaattgctcaaataaaaatgtttgctaca
tctggtaaaattagtttctcaaatagtgcaaaatttgaaccacaaaaactaataaaactt
atccaatcacagcctgctgattttagactcactaaagagcaagatctgctaattataaaa
gcaacaaaaactgcagaacaaagaatagagtttgttgagaattttttaaagaagattgct
taa
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