KEGG   Flavobacterium psychrophilum Z2: AMR72_01115Help
Entry
AMR72_01115       CDS       T04556                                 

Definition
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fpsz  Flavobacterium psychrophilum Z2
Pathway
fpsz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fpsz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMR72_01115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fpsz03400]
    AMR72_01115
Enzymes [BR:fpsz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMR72_01115
DNA repair and recombination proteins [BR:fpsz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMR72_01115
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ALM47618
UniProt: A0A0P0U5U7
LinkDB All DBs
Position
complement(250791..253436)
Genome map
AA seq 881 aa AA seqDB search
MKLSEYNKKRDFKKTAEPKGKVKKSGKELRFVVQKHDASRLHYDWRLEIDGVLVSWAVPK
GPIADTTVKRLAMHVEDHPMDYIDFEGTIPKGQYGGGTVMVWDTGTFLAEGSDDVQESEK
MLQKMHKEGNIKVVMSGKKLKGSYHLVRMSGKQDEWLLLKGKDEYADKKEFDQDSVLTGR
TLEEIESDKKSDVWESNREEKTKHGDDSNILEDDLKSKKALKKETDPTPAFTAEDVANAK
PLKTFPKDWKPQLATLADEIFDNDEWIFETKYDGYRSLIQINKGKVDLVSRNGISFNNKY
AQLVKSFGVIKDNMILDGEIVVEDNKGNSRFQWLQYFQDNPDQGKLKCYVFDILYFNGYD
LTSLKLLQRKRILEALLPQADDILYSEHIIGKGAKALAKAEKDGGEGLIAKKISSTYHVN
KRSKEWLKIKITKEQEMVIGGYTEPKGSRTGFGSLLLGYYEDGKFIYSGKVGTGFNEESL
KEMYLKLTKLESKTSYFEIKPKERGAHWIKPELVAQIKYSEWTETGSLRHPVFIALRTDK
KPKDVTREKAIATDKIVPEEKATQDIKKAKSTIVKKENVSAKTTTRGFDTEKVEVSNPDK
MFWPTEGYTKGDVIAYYDEMADYVLHYIKDRPQSMRRNPDGIKNEGFFQKDMAGKAPSWA
KTRKIKSSSKGESVEYLICNDKETLIYMANLGCIEINPWSSRVGSINNPDYIIFDLDPNK
ASLKDLVTTAKKVKEILDSLSIKGYLKTSGGKGLHVFIPIQPKYTYDQTRDFSHIISEAV
HKALPKITSLERSPAKRIGKVYLDFLQNGKGKTMACAYSLRPREGATASAPLEWDELDNK
FDLKNYNIKTLPKRVKEKGDLWKNFFDDAIDLKAVLDKLSE
NT seq 2646 nt NT seq  +upstreamnt  +downstreamnt
atgaagttatctgaatataataagaaaagagattttaagaagactgccgagcctaaagga
aaggtgaaaaagtcaggcaaggaacttcgctttgttgttcagaagcatgatgcatcccga
ttgcattacgattggcgtttagaaattgatggtgttttagtgagctgggcggttcctaaa
gggccgatagccgatacaacagttaaacgcctggcgatgcatgttgaagatcaccctatg
gattatattgattttgaaggcactataccaaaagggcaatatggtggtggtactgttatg
gtttgggatacaggtacttttttagctgaaggaagtgatgatgttcaggaaagtgaaaag
atgctgcagaagatgcataaagaagggaacatcaaggttgtgatgagtggtaaaaagcta
aaaggctcttaccatctcgtacgaatgagcggtaaacaggatgaatggctattgcttaaa
ggaaaagatgaatatgcagataaaaaagaattcgatcaggattcggtattaacagggcgt
acgctggaagaaattgaaagtgataaaaaatcggatgtttgggaaagtaacagagaagaa
aaaaccaaacatggcgatgacagtaacatactggaagatgatttgaaaagtaagaaggct
ttaaagaaggaaaccgaccctactcctgcttttactgctgaagatgtcgccaatgcaaaa
ccgcttaaaacttttccaaaagattggaaaccacaattggccactttggcggacgaaata
tttgataatgatgaatggatatttgaaaccaaatatgatgggtatcgttcgcttatacaa
ataaacaaaggtaaagtagatcttgtttcgcgaaatggtatatcattcaataataagtat
gcacagcttgtaaagtcatttggggttattaaagataacatgatactggatggcgaaatt
gttgttgaggacaataaaggcaatagtcgttttcagtggctgcaatactttcaggataat
ccggatcagggcaaattaaagtgttacgtgtttgatattctttatttcaacggctacgac
ctgacttcactcaaattacttcagcgtaaacgaattctggaagcgctattgccccaagca
gatgatatactatattcagaacatataatcggaaaaggcgcgaaggcacttgcaaaagca
gaaaaggatggtggtgaaggacttattgctaaaaaaatatcgtctacctaccatgtaaac
aaacgatctaaagaatggcttaaaattaaaataactaaagaacaggaaatggttattggc
ggctatactgaacctaaaggttcacgtacaggctttggctcgctccttcttggctattat
gaagatggtaagtttatatattcaggtaaagtaggtacaggcttcaacgaagaatcattg
aaagaaatgtacctaaagcttactaagctggaaagtaagacatcttacttcgaaatcaaa
cctaaagaacgtggcgcacactggattaaacctgaacttgtcgcccagataaaatattct
gagtggactgaaactggaagcctgcgtcaccctgtttttattgcattgcgaacagataag
aaaccaaaagatgttacaagggaaaaagctatagcaaccgataaaatcgtacccgaagaa
aaagcgactcaagacattaaaaaagctaaatctaccattgtgaaaaaagagaatgtttca
gcaaagacgacgactaggggttttgacaccgaaaaagttgaagtatccaatcctgataaa
atgttctggcctacagaaggctatactaaaggtgatgttatagcgtattatgatgaaatg
gcagattatgtacttcattatataaaggacaggccacaatcaatgcgccgtaatcccgat
ggtataaaaaatgaaggtttctttcagaaagatatggctggaaaagcaccatcctgggca
aagacccgaaaaattaaatcttcatcaaaaggtgaatctgttgaatatctaatatgtaat
gataaagaaacactcatttatatggcaaacctgggatgcattgaaataaatccctggagt
agccgtgttggaagtataaataatcccgactatattattttcgaccttgacccaaataaa
gcttcactaaaagatcttgttactacagctaaaaaagtaaaagaaattttagacagcctg
agcataaaaggttacttaaaaacctcggggggtaaaggattgcatgtgttcatcccgata
cagcctaagtatacgtacgaccaaacaagggatttctctcacattattagcgaagccgta
cacaaagcactacctaaaataaccagtcttgagcgcagtcctgcaaaacgtattggcaaa
gtttatttagattttttacagaatggtaaaggcaaaaccatggcctgtgcttattctctc
cgtccacgggaaggcgctacagctagcgctccactagagtgggacgaactggataataaa
ttcgacctgaaaaattacaacattaagacattgccaaagagggtcaaagaaaaaggtgat
ctttggaaaaacttctttgatgatgcaatcgatctcaaggcagtacttgataaactaagt
gaataa

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