KEGG   Flavobacterium psychrophilum Z2: AMR72_15345Help
Entry
AMR72_15345       CDS       T04556                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fpsz  Flavobacterium psychrophilum Z2
Pathway
fpsz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fpsz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMR72_15345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fpsz03400]
    AMR72_15345
Enzymes [BR:fpsz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMR72_15345
DNA repair and recombination proteins [BR:fpsz03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMR72_15345
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID: ALM50148
UniProt: A0A0P0UCE5
LinkDB All DBs
Position
complement(3490426..3493101)
Genome map
AA seq 891 aa AA seqDB search
MALEKYRQKRDASKTPEPFGGKSNDDKLRFVIQKHAASHLHYDFRLEMEGVLKSWAVPKG
PSADPEVKRLAMMVEDHPYDYRNFEGIIPQGEYGGGTVIVWDEGFYEPFESQATTKKDQD
KELRAGLHSGKIKFVLKGKKLKGAFALIKAHGRGENGWLLMKLEDKYATATDVTKKDKSV
VSGKTLEQVAKTSTNIYGKKPAESEQETLEKKVETTKEKPKALQADALLKKGKRSKLLTE
VKPMLATLVSEPFDTPGWIYEVKWDGYRALAYINKGKSDLLSRNLKSFTEKYYPIAAVMD
SWSINAVLDGEILVIGKDGKANFSALQNWRSEADGDLVYYAFDLLWYEGKDITGLPLSER
QAILKEILPTNDDHVRLSQVFDTNGIDFFEAAQKMGLEGIMAKKADSIYAIDARSKDWLK
IKVNQRQEVVIGGFTRNEGTAKQFSSLLLGVYEKGKFEYVGKVGTGFSDKKQKEMMALFK
PLITDKIPFDTKPDVNKPSRFRPNPPKATATWLKPELVCEVSFIEVTGDGVFRHPSFEGM
RTDKKAKDVVRERAAETKTVTSPAKQDKLVSAPKRGAVKTLLNPKEESQVKKVNGHNLKF
TNLSKVYWPEEGYTKRDMFNYYYQVADYILPHLKDRPLSLNRFPSGIHGKSFYQKDVKGK
APEWATTYPYTTSDGEDKEFLVGDDEATLLWMASLGCIEMNPWFSRIQHPDNPDYCVIDL
DPAEKTTFEQVIQAAREVKKVLDAIDVVSYVKTSGSTGIHIYIPLGGKYSYDQSQMFARL
LVSIVHERLPEFTSLERKIKDRAGKMYLDFLQNRPGATIACAYSLRPKPGATVSMPLHWD
EVKKGLKMKDFTIKNALGRVKSEGDLFKGTLEGGIDMEKALLNAQNVLYKK
NT seq 2676 nt NT seq  +upstreamnt  +downstreamnt
atggctttagaaaaatacagacaaaagcgtgacgcctctaagaccccagagcctttcggc
gggaaaagcaacgatgataaattgcgcttcgtaattcagaaacatgcggcatcccacctg
cattacgattttcgccttgaaatggaaggcgtactcaaaagctgggcggtacccaagggt
ccatcggcggaccctgaagtaaaacgccttgccatgatggtagaggaccatccctacgat
taccgcaatttcgaaggtatcattcctcagggagaatatggcgggggcactgtcatagtc
tgggacgaaggtttttatgagccgtttgaatctcaggccacgacgaaaaaggatcaggat
aaggaactgcgcgccgggctgcacagcggcaagatcaagtttgtattaaaaggtaaaaaa
cttaaaggcgcattcgccttgattaaagcccatgggcggggcgagaacggctggctgctg
atgaagctggaggacaaatatgccactgccactgacgtaacaaaaaaagataagtccgtg
gtatcgggaaagacgctcgaacaggttgccaaaaccagcacgaacatttacggaaagaaa
cctgccgaatcagagcaggaaacattggaaaagaaagttgaaactactaaagaaaagcca
aaggcattacaggccgatgcattgttgaaaaaagggaaaagaagcaaactgcttaccgag
gtaaagcccatgctggccacgctggtgagcgagccttttgataccccagggtggatctat
gaggtaaaatgggacggctaccgcgccctggcctacatcaacaaaggcaagtcagacctt
ttatcccgaaacctcaaatcgtttaccgagaaatactaccccatcgcagcagtcatggat
tcctggagcatcaatgcggtattggatggggaaatactggtaatcggcaaggacggtaaa
gccaacttcagtgccctgcagaattggcgcagcgaagccgatggcgacctggtgtactat
gcctttgaccttttatggtatgaagggaaagacattaccgggctgccgctatcagaacgc
caagcgatactgaaagaaatattgcccacaaatgacgaccatgtgcgcctgagccaggta
tttgacaccaacgggattgacttttttgaagcagcacagaaaatggggcttgaagggatc
atggcaaaaaaagcagacagtatctatgccatcgacgcccgttccaaagactggctaaaa
attaaagtcaaccaacgccaggaagtggtcattggcggctttacccgaaacgaaggcacg
gccaagcagtttagttcgcttttacttggcgtatatgaaaagggtaaatttgagtatgtc
ggtaaagtcggcaccggtttcagcgacaagaaacagaaagaaatgatggcgcttttcaag
ccgcttattactgataaaatcccttttgacaccaaaccggatgtcaacaagccttcaaga
ttcagaccgaacccgcccaaggccaccgctacatggctaaaacctgaactggtgtgcgag
gtaagctttatcgaggtgaccggcgatggggtcttccgacacccttcgtttgaagggatg
cgcacggataaaaaagctaaggatgttgtacgggagagggctgccgaaaccaaaaccgtt
acatcccctgccaaacaggataagcttgtctcagccccaaagcgaggggcggtaaaaacg
ctgctcaacccaaaagaagaatcccaggttaaaaaggtcaatgggcataacctgaaattt
accaacctaagcaaagtgtactggcccgaagaagggtataccaagcgcgatatgttcaac
tactattaccaggttgctgactatatccttccgcatctcaaagatcggcccctgtcgcta
aaccgtttcccgagtggtattcatggaaagagcttttaccagaaggatgtaaagggcaag
gcacccgaatgggcaaccacatatccctataccaccagcgatggggaggataaggaattt
ttagtcggtgatgatgaggccacattactctggatggcatctcttggttgcattgagatg
aatccgtggtttagccgcatacaacacccggataatcccgattattgcgtgattgatctt
gacccggccgaaaaaacaacttttgagcaggtcatacaggcagcccgagaggtaaaaaaa
gtgctggatgctattgatgtggtaagctatgtaaaaacctcaggatcaaccggcatccat
atttatataccattggggggtaaatatagttacgaccagtcacagatgtttgccaggctc
ctggtatcaatagtgcacgagcggcttccggaatttacctcactggagcggaaaataaaa
gaccgcgccggaaaaatgtacctggactttctgcaaaaccgtcccggcgcaacgattgcc
tgtgcctattcgctgcgccccaagccgggtgcaacagtctctatgcccctgcactgggat
gaggtaaaaaaggggttaaagatgaaagactttaccattaaaaatgcactcgggagagtt
aaaagtgaaggggatctgtttaagggaacgcttgagggtggaattgatatggaaaaagca
ttactaaatgcgcagaatgtactctataaaaagtaa

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