Frankia casuarinae: Francci3_1040
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Entry
Francci3_1040 CDS
T00320
Name
(GenBank) Exonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
fra
Frankia casuarinae
Brite
KEGG Orthology (KO) [BR:
fra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fra03019
]
Francci3_1040
03009 Ribosome biogenesis [BR:
fra03009
]
Francci3_1040
Messenger RNA biogenesis [BR:
fra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Francci3_1040
Ribosome biogenesis [BR:
fra03009
]
Eukaryotic type
Pre-60S particles
RNases
Francci3_1040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DUF3376
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
ABD10422
RhizoBase:
Francci3_1040
UniProt:
Q2JE70
LinkDB
All DBs
Position
complement(1236185..1236937)
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AA seq
250 aa
AA seq
DB search
MTTATADHSVSGMDRLVWIDCEMTGLDAASDLLLEVACLVTDSELNILDEGIGLVISAPE
EALQTMEPVVREMHEASGLTAAVRASTLSLDDAERQLLDYVRTRIPEVRKAPLCGNSIAT
DRTFLARYLPSLDAHLHYRMIDVSSIKELARRWYVRAYYAAPVKRGGHRALADIQESIEE
LRYYRRAVFVPQPGPGTEQARAIAAEIRDQADASLASLTAGGSEHPQPDDPAGSPARLDG
RPSTARLNGQ
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacggcgaccgcagaccatagtgtcagcgggatggatcgactagtgtggatcgac
tgcgagatgaccggcctggacgccgcgtcggatctactcctggaagtggcctgcttggtc
acggacagtgagctcaacatcctcgacgagggcatcggcctggtcatctcggcgccggag
gaggcgctgcagaccatggagccggtcgtccgcgagatgcacgaggcctcgggcctgacc
gccgccgtccgggcgtccaccttgtccctcgacgacgcggagcgccagctcctcgactac
gtccgcacccggattcccgaggtgcgcaaggccccgttgtgcggcaactcgatcgccacg
gaccgcaccttcctcgcacgctatctgccgtcgctggacgctcacctgcactaccgcatg
atcgacgtttcgtcgatcaaggagctcgcccgccgctggtacgtgcgggcctactacgcg
gctccggtcaaacgcggcggccaccgggccctggcggacatccaggagagcatcgaggag
ctgcgctactaccgacgggccgtgttcgttccccagccggggccgggcaccgagcaggcc
cgcgcgatcgccgccgagatccgcgaccaggccgatgcgtcgctggcctccctgaccgcc
ggaggctccgagcacccgcaaccggacgacccggccggttcacccgcgcggctggacggg
agaccttccaccgcccgcctgaacgggcagtga
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