Frankia sp. EAN1pec: Franean1_4939
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Entry
Franean1_4939 CDS
T00608
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
fre
Frankia sp. EAN1pec
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fre03021
]
Franean1_4939
Transcription machinery [BR:
fre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Franean1_4939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
SnoaL_2
Sigma70_r4
SnoaL_4
DUF4440
HTH_23
NTF2
Sigma70_ECF
SnoaL_3
Motif
Other DBs
NCBI-ProteinID:
ABW14303
RhizoBase:
Franean1_4939
UniProt:
A8LHB3
LinkDB
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Position
complement(5929218..5930243)
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AA seq
341 aa
AA seq
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MGDVPPGGRTGGAALAGAEAGVENLLEPYRRELTGYCYRMLGSPFEAEDAVQDTMIRAWR
GIDRFEGRAALRSWLYRIATNVCLSMLGASQRRARPMDLAGPSAADSPLPAPLPETAWIV
PAPDGQVYSSAADAADPADLAARRETIRLAFVVALQHLPARQRAVLILREVFGWPAAEVA
DLLETSVASVNSALQRARATIAATEISDADPLRPADAEQRELLARYVDAFERYDLESLAA
LLHEDVTMSMPPLGLWLRGHADVRAWMLGTGQGCRGSRLLPTVANGHPAFGQYRPSATGS
GHDPWGLVVLEISAGRVAGINTFLDVERLFPLFGLPARLPG
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacgttcctcccggcggcagaaccggcggggctgctctggccggggcggaggcg
ggtgtcgagaatcttctcgagccgtaccgccgcgagctgaccggctattgctaccgaatg
ctcggctcgccgttcgaggcggaggacgccgtgcaggacacgatgatccgcgcctggcgc
ggaatcgaccggttcgaaggccgggccgcgctgcggtcgtggctgtaccgcatcgcgacg
aacgtgtgcctgtcgatgctcggcgccagtcagcggcgggcacggccgatggacctcgcc
ggcccgtcggcggccgactccccgctgcccgcgccgctgccggagacggcctggatcgtg
cccgcgccggacggccaggtctactccagcgccgccgacgcggccgaccccgccgatctc
gccgcccgtcgcgagacgatcaggctcgcgttcgtcgtcgcgctgcagcacctgccggcc
cgccagcgggcggtgctcatcctgcgcgaggtgttcggctggccggccgccgaggtcgcc
gacctgctggagacctccgtcgcctcggtcaacagcgccctgcagcgggcgcgcgccacg
atcgccgcgacggagatctccgacgccgacccgctgcgccccgccgacgccgagcagcgg
gagctgctcgcccgctatgtcgacgcgttcgagcggtacgacctcgagtccctcgcggcg
ctgctgcacgaggacgtcacgatgtcgatgccgccgctgggcctgtggctgcggggccac
gccgacgtccgggcatggatgctcggtacgggccagggctgccggggctcgcggctgctg
ccaaccgtggccaacggccacccggccttcgggcagtaccggcccagcgccacgggttcc
gggcacgacccgtggggcctggtcgtcctggagatctcggccgggcgggtcgccggcatc
aacacgttcctggacgtcgaacgcctcttcccgctgttcggcctgccggcccggttgcct
ggctag
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