KEGG   Frankia sp. EuI1c: FraEuI1c_4744Help
Entry
FraEuI1c_4744     CDS       T01354                                 

Definition
(GenBank) DNA polymerase LigD, ligase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fri  Frankia sp. EuI1c
Pathway
fri03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FraEuI1c_4744
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fri03400]
    FraEuI1c_4744
Enzymes [BR:fri01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FraEuI1c_4744
DNA repair and recombination proteins [BR:fri03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FraEuI1c_4744
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ADP82735
UniProt: E3IZG5
LinkDB All DBs
Position
complement(5813875..5815551)
Genome map
AA seq 558 aa AA seqDB search
MSGDAPRGLDAYRGKRDAARTPEPVPEADPARHPRPDPAAPSDPAASGPAAAVDSQEAGP
VDHTGDDQAGRGDTFVIQEHHARALHWDFRLERDGVLVSWAVPRGLPVDRTANHLARQTE
DHPLEYAEFAGEIPKGEYGGGTVTIWDRGGYELESWTADKIKVTLHGSRVQGRYVLFRAG
GGRTTARQTTARQTTARQTTARQTGARAYGPDDWMVRRLDPPDDPTREPMPTTLAPMRAV
ASRELPAGPDWAYEVKWDGMRVLAFVDGGRVRARSRTGRDVTAAFPELRAVGLALGSTQA
VLDGEIVAFGPDGTPDFGRLAHRMHVADAAAARRLAGRIPVSYLVFDLLFLDGHPTTARS
YDERRALLARLPGLTLSETLAGDGPDVLRASAEAGLEGVIAKRRSAAYLPGRRGSDWVKV
KNTRTQSVVIGGWEPGAGKRADRVGSLLVGVAERPGLGEAPPGAPRFRYAGHVGTGFSDA
TLDLLGRLLAPLRRDEPPFADVPDAHVRAAVWVRPELVAEVAYAHWTADNRLRHPSFKGL
RDDLAPAETVVDGDTEPT
NT seq 1677 nt NT seq  +upstreamnt  +downstreamnt
gtgagcggggacgccccgcgcgggctcgacgcctaccgcggcaaacgggacgcggcccgc
accccggaaccggtccccgaggccgaccccgcccggcacccgcggcccgaccccgctgcc
ccctccgaccccgccgcctccggtcccgccgccgccgttgactcccaggaagccgggccg
gtcgaccacacgggcgacgaccaggccgggcgcggcgacacgttcgtcatccaggagcac
cacgcccgcgcgttgcactgggacttccggctggagcgggacggcgtgctcgtctcgtgg
gcggtccccaggggcctgccggtcgaccggaccgcgaaccacctggccaggcagacggag
gaccacccgctggagtacgccgagttcgccggcgagatcccgaagggcgagtacggcggc
ggcacggtgacgatctgggaccggggcggctacgagctggagagctggaccgccgacaag
atcaaggtcacgctgcacggcagccgggtccagggccgctacgtgctgttccgggccggc
ggcggccggaccacagcccgccagaccacagcccgccagaccacagcccgccagaccaca
gctcgccagaccggcgcccgtgcctacgggccggacgactggatggtgcggcggctcgac
ccgcccgacgacccgacccgggagccgatgccgaccacgctcgcgccgatgcgggccgtc
gcgagccgtgagctgccggccggtcccgactgggcctacgaggtcaagtgggacggcatg
cgggtgctggcgttcgtcgacggcggacgggtccgggcccgcagccgtaccgggcgcgac
gtgacggccgcgttccccgagctgcgcgccgtcggcctggcgctcgggtcgacccaggcc
gtgctcgacggcgagatcgtcgccttcggcccggacggcacacccgacttcggccggctg
gcccaccggatgcacgtcgccgacgcggccgcggcgcgccggctcgccggccggatcccg
gtcagctacctcgtcttcgacctgctgttcctcgacgggcacccgacgaccgcccggtcc
tacgacgagcggcgggccctgctggccagactgccgggcctgacgctgtccgagacgctg
gcgggcgacggccccgacgtgctgcgggccagcgccgaggccggcctggagggcgtcatc
gcgaagcggcgttcggcggcgtacctgcccggccggcgcggctccgactgggtgaaggtg
aagaacactcgcacgcagtccgtcgtcatcggcggctgggagcccggcgctgggaaacgc
gccgaccgggtcggctccctgctcgtcggcgtcgccgagcgccccggcctgggcgaggcg
ccccccggcgcgcccaggttccggtacgccgggcacgtgggcaccggcttctcggacgcc
accctcgacctgctcggccggctgctggcgccgctgcggcgcgacgagccgcccttcgcc
gacgtgccggacgcgcacgtccgcgccgccgtctgggtccgcccagagctggtcgccgag
gtcgcgtacgcccactggaccgcggacaaccggctgcgccatccgtcgttcaaggggctg
cgcgacgatctcgcccccgccgagacggtcgtcgacggcgacaccgaaccaacctga

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