Flavobacterium sediminis: DI487_11035
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Entry
DI487_11035 CDS
T06625
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fse
Flavobacterium sediminis
Brite
KEGG Orthology (KO) [BR:
fse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fse03016
]
DI487_11035
Enzymes [BR:
fse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DI487_11035
Transfer RNA biogenesis [BR:
fse03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DI487_11035
Prokaryotic type
tRNA splicing ligases
DI487_11035
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWM14335
UniProt:
A0A2U8QX23
LinkDB
All DBs
Position
2398089..2399480
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AA seq
463 aa
AA seq
DB search
MGNKLSGRDLIKLGFPKNNTINIALGQINRYRKKEKKESILSEAKEVLLYPEKFKNHGTW
GKLAEGLVNPVQVKLQQLRNSRVPFSIFGENEIEEQAKFQLYDALKLPIAVQGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGVDIGCRMSLSVFDLPASFIKGKEEQLKAILSDHTKFG
MSETHKVKADHEVFYREEFKNIPVVKQLLDKAYKQLGTSGGGNHFVEFGVVNLQETLPEW
KLEAGEYLAVLSHSGSRGFGANIAKHYTYLATKQCPLPKNVQHLAWLDLNTHDGQEYWMA
MNLAGDYAKACHEDIHRRIAKALGKRIALTIENHHNFAWKEQVNGKECIVHRKGATPAAQ
GELGIIPGSMTAPGFIVMGKGNPEALNSASHGAGRLLSRGKCKVTFTQGQIKKELKEHNV
SLIGGSVDEAPMAYKNIHTVMELQKELVSVLGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaataaattatcaggaagagacctaatcaaattgggttttcctaaaaataataca
atcaatatagctttagggcaaattaacagatatcgcaaaaaagaaaaaaaggaaagtatt
ttatccgaagctaaagaagtgcttttatatcctgaaaagttcaaaaaccacggaacttgg
ggcaaattagctgaaggtttggttaatccggttcaggtcaaattacaacaattgcgaaac
agtagagtgccattctctattttcggagaaaatgaaatagaagagcaagctaagtttcag
ttgtacgatgctcttaaacttccgattgccgttcagggagctttaatgcctgacgcacat
tccggttacggattgccgatcggtggtgttttggcaaccgataatgctgtcattccgtat
ggagtaggagtggatatcggctgtcgaatgagcttgtcggtttttgacttgccggcttct
tttataaaaggaaaagaagaacagttaaaagcaattttatccgatcacaccaaattcggt
atgtcagaaacacataaggttaaagccgatcatgaagtgttttatcgcgaagagttcaag
aacattccggttgtaaaacaattattggataaagcctataaacagttgggaacttccggt
ggaggaaatcactttgtggagtttggtgtagtcaatttacaggaaactttaccggagtgg
aagttagaagcaggggaatatctggcggttttgtcacacagtggttctagaggtttcgga
gctaatattgcgaagcattacacctatttggctacaaagcaatgtccgttacctaagaat
gtacaacatttagcgtggctcgatctgaatacacatgatgggcaggagtattggatggca
atgaatttagccggtgattatgccaaagcttgtcacgaagacattcaccgccgaatagcc
aaagcactgggaaaacgtattgctttaaccatagaaaaccatcacaattttgcttggaaa
gagcaagtaaacggcaaagaatgtattgtgcatcgcaagggagcgactccggcagcacaa
ggcgaactcggtattattccgggttctatgacagcaccgggatttattgtgatgggaaaa
ggaaatccggaagctttgaattcggcttcgcatggtgccggacgattactttccagagga
aaatgtaaagtaacatttacgcaaggccaaattaaaaaggaactgaaagaacacaacgtt
tccttaattggcggtagtgttgatgaagcgccaatggcgtataaaaatatccataccgta
atggaactgcaaaaggagttagtaagcgttttgggaacatttacgcccaaaattgtacga
atggataaataa
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