KEGG   Flaviflexus salsibiostraticola: EJO69_09390Help
Entry
EJO69_09390       CDS       T05752                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
fsl  Flaviflexus salsibiostraticola
Pathway
fsl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:fsl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EJO69_09390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fsl03400]
    EJO69_09390
Enzymes [BR:fsl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EJO69_09390
DNA repair and recombination proteins [BR:fsl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EJO69_09390
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AZN30496
LinkDB All DBs
Position
complement(2019984..2022593)
Genome map
AA seq 869 aa AA seqDB search
MSHSLDRPPPCRKVERQRHGVYSQRTLEKGTAVAHGKKFQVGERSLSVTNLGKVMYPETG
TTKAEVIHYYLAVADAILPLLRGRPVTRKRWVDGVGTAEEPGEVFFRKDLEDSAPSWIPV
GKITHSSRINRYPLVEEPATLAWFAQVAALELHVPQWRFGRNGQPRNPDRLVLDLDPGPG
VGLIECAEVARWCREILDDMGMETYPVTSGSKGIHLYAPLEGAHNSDAISSVAKELARAL
EADHGDLVVSEMKKAKRTGKVFVDWSQNSASKTTISPYSLRGRLRPTVAAPRTWEELDEP
DLDHLVMEQVLDRLADGFDPIAPLAAGSEAETVDRLTTYRSMRNPEKTAEPVPADPPRPR
TLDEGDLPSFVIQEHHARRLHWDFRLEHSGVLVSWAVPKSPPLEKDTNRLAVMTEDHPLE
YGTFEGTIAPGEYGAGEVTIWDAGVYEREKWREGKEVIVVLHGRPDGGLGGVPRRYALIN
APGMGEDKNWLIRLMNDQPDEDTSASDGTDTGTSKDTGSTTATGPRSKPSDRPRTDPQPT
VSVSDLPAPMLATRGTPAEIARSIADGEEWAFEMKWDGYRIITGVDTGGGLALASRNGKD
LTHAFPAGIELVELLQGEAGEQGGAVLDGELVALDEQGRPDFGLLQASIKDGEAAELRYM
VFDILQLGPPGPGAGRSLVRTPYRERREILLDSLAAGEAIAIPPAHTGRLELAQRVSREL
GLEGVVAKRIDSTYLSGQRGSAWIKLKLQIHQEVVIVGARHGADNPDRIRSLLVAVPDGE
GDLVYAGRVGTGFTQAQLAEIKKRLERIRRKTPPIAGIPDADRRDAWWVTPKLVAEVSIA
GRTRGGSVRHAVWRGWREDKAPGDVRWEV
NT seq 2610 nt NT seq  +upstreamnt  +downstreamnt
atgtcgcacagcctagacagaccgcccccttgccgaaaggttgagcggcaaagacatgga
gtctactctcagagaacgctcgagaaaggaacggccgtggcccacgggaagaagttccag
gttggcgagcgctcactgtcggtcaccaatctgggcaaggtgatgtaccccgagacgggg
acgaccaaggctgaggtcatccactattacctcgccgtggccgacgcgattctcccgctc
cttcgcggcaggcccgtcacccgcaagcgatgggtcgacggtgtcggcaccgccgaggag
cccggcgaggtcttcttccgcaaggatctcgaggattccgcgccctcctggatcccggtc
ggcaagatcacccactcgagtcgcatcaaccgctacccgctcgtcgaggagccggccacg
ctcgcgtggttcgctcaggtggcggccctcgagctgcacgtgccgcagtggcgattcggc
cggaacggccagccccgcaatcccgaccggctcgtcctcgatctcgaccccggacccggc
gtcgggctgatcgaatgcgcggaggtggcccgctggtgccgcgagatcctcgatgacatg
gggatggagacgtacccggtcacctcgggctcgaaggggattcacctgtacgccccgctc
gagggcgcccacaactctgacgcgatctcctccgtcgccaaggagcttgcccgagccctc
gaagccgaccatggcgacctcgtcgtgtcggagatgaagaaggcgaagcgaaccgggaag
gtcttcgtcgattggagccagaacagcgcctcgaagacgacgatcagcccctattcgctc
cgcggtcgcctcaggccgaccgtcgccgctccccgcacgtgggaggagctcgatgagccc
gacctcgaccatctggtgatggaacaggtcctcgatcgcctggccgacgggttcgacccg
attgcgccgctcgctgcgggatcagaagcggagacggttgatcggctcaccacgtacagg
tcgatgaggaacccagagaagacggctgagcccgtaccagcggatccccctcgaccccgc
acccttgacgagggcgacctgccatctttcgtcattcaggagcatcacgcccggcgcctc
cactgggatttccgtctcgaacactcgggagttctcgtctcgtgggcggtgccgaagagc
cctccgctcgagaaggacaccaaccgcctggcggtcatgaccgaggaccaccctctcgag
tacggcacgttcgagggcacgatcgccccgggcgaatatggtgccggggaggtgacgatc
tgggacgcgggcgtctatgagcgtgagaagtggcgcgagggcaaagaggtcatcgttgtc
ctccacggcaggccagatggagggctcggcggggtcccacggcgctacgcccttatcaac
gctccgggcatgggcgaggacaagaattggcttatccgactcatgaacgatcagccggac
gaagacacctcggcctctgacggcacagacacgggcacctcgaaggacacggggtctaca
acggccacgggtccccggtcgaagccctcggacaggccgcggactgacccccagccgacc
gtcagcgtgagcgaccttccggcgcccatgctcgccacccgcggcacacccgctgagatc
gcgcgcagcatcgccgacggcgaggaatgggcattcgagatgaagtgggacggctaccgc
atcatcaccggcgttgacacgggaggcggactcgccctcgcaagtcggaacggcaaagac
ctgacacacgccttccccgcgggaatcgagctcgttgagctgttgcagggtgaggccggc
gaacagggcggagcagtcctcgacggggagctggtcgccctcgacgagcaggggcggccc
gactttgggctcctgcaggcctcgatcaaggatggcgaggccgctgagctgcgctatatg
gtcttcgacatcctccaactcgggccgcccggtccaggcgcgggccgctccctcgtgagg
actccctaccgcgagcgccgggagatcctgctggactcccttgccgccggggaggccatt
gccatcccacccgcacacaccggccggcttgagctcgcccagcgggtgagccgcgagctc
ggcctggagggcgtcgtcgccaagagaatcgactccacgtatctctcgggccagcgaggc
tccgcctggatcaagctcaaactccagatccatcaagaggtcgtcatcgtcggcgcccgg
cacggggcggacaatccagaccggatcaggtcccttctcgtcgcggtcccggacggggag
ggggatctggtctacgccgggcgggtcggcactggattcacccaggcccagctggcggag
atcaagaagcggctggaacggatcagacggaagactccgccgatcgcgggtatacccgac
gctgacaggagggacgcgtggtgggtgacgccgaaactcgtcgccgaggtgtcgattgcc
ggtcggactcgaggcggcagcgtgcgccacgccgtgtggcgcgggtggcgcgaggacaag
gcacccggtgacgtgcgatgggaggtctga

DBGET integrated database retrieval system