Flaviflexus salsibiostraticola: EJO69_10490
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Entry
EJO69_10490 CDS
T05752
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fsl
Flaviflexus salsibiostraticola
Pathway
fsl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EJO69_10490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsl03400
]
EJO69_10490 (mfd)
Enzymes [BR:
fsl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EJO69_10490 (mfd)
DNA repair and recombination proteins [BR:
fsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EJO69_10490 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AZN30682
UniProt:
A0A3Q8WUK9
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All DBs
Position
2256202..2259768
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AA seq
1188 aa
AA seq
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MEAVLGRLRNEPTLSELPLSRDKRLDVAMPLGLIPGALALLAKDGDRPTVVVTPTGRDGD
ELLGALAAYLPREELDILPSWETLPHERLSPRADTVATRLSVMRRLAHPEEFGRLSVLIV
PIRSLLQPVVKGLGDMVPVRVRTGEEMELEALATALVDAAYVRVDMVESRGQFAIRGGIL
DVFPPTEPHPLRVEFFGDEIDEIRSFSVADQRSLEVVDEVYAPPCREILIDEAVRERARR
AADSLPGARDMLEKIAQGIAVEGMESLAPVLTEGMHPIHELFDPASRVVVVQPERVFSRS
QDLVATTEEFLAAAWSSAAAGGDVPLTVSDASFLEIEDVGRAIRGRGMAWWSFGGFTGDQ
ELDSTKRAVEAQEPKPFHGDVDAALSEMGMLAAQGWWPTIVVEGGGLGRRIASELNKQDI
PAEFVTELEEIPGVVTITAAPISTGFIIPGVRLAVLAASDITGRGGSSTKDMRKMPSRRR
ATVDPLQLKPGDYIVHDRHGVGRFLRMDSRPIDGTDGAMREYLVVEYAPSKRGMPGDQLW
IPTDSLDLVSRYSGSEAPQVSKMGGADWAKAKAKARKATEQIAGELVRLYATRKATKGFQ
FSPDTPWQRELEDAFAYVETPDQLVTIDEVKRDMESPTPMDRLISGDVGYGKTEIAIRAA
FKAVQDSKQVAVLVPTTLLVSQHLETFQERYAGFPVTVAGLSRFQSEEESEKVKAGIKDG
SIDVVVGTHRLLTGSISFKDLGLVIIDEEQRFGVEHKETLTQLRANVDVLSMSATPIPRT
LEMAVTGIREMSTLATPPEERHPILTYVGPYEEKQVSAAIRRELLRDGQVFYVHNRVQSI
RAQAKKVEELVPEARVAVAHGKMSEKQLETVIQQFWDREVDVLVCTTIIETGLDISNANT
LIVDNAERLGLSQLHQLRGRVGRGRERAYAYFLYPPDKAMTETAVARLRTISSHTQLGSG
IQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMIAEQVEAMQAMLTGGRKDEPEPPP
IKLDLPIEATVPDSYVPQEGLRLDIYSKVANSSTEEERDQIRAELVDRYGPIPPAVERMF
LVAQIRETMRAAKLEDAVVQGEYLRLYPVALPDSRQMRLKRLHPRAVVKPAVRSVLVPLP
VTGKGRLGSAPEPVMNEDFGDWFADLMRAVFLPDAEGRGGNSPDAAVG
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgtcctcggcaggctccgcaacgagccgacactctccgagctcccgctctcc
cgggataagcgccttgatgtggccatgccactcggcctcatccccggtgccctcgccctg
ctcgcgaaggacggggaccgcccgacggtcgtcgtcaccccgaccggtcgggacggcgac
gagctgttgggcgccctcgcggcgtacctgccccgcgaggagctcgacatcctcccctcg
tgggagacgctcccgcacgagcgactgtcgccccgcgccgacaccgtcgcgacaaggctg
tccgtcatgcggcggctcgcccaccctgaggagttcggcaggctctctgtccttatcgtc
cccatcaggtctctcctgcagcccgtcgtcaagggcctgggtgacatggtgcccgtccgc
gtccgcacgggcgaggagatggagctcgaagcactggcgaccgcgctcgtcgacgccgcc
tacgtccgtgtcgatatggtcgagtcgaggggacagttcgcgatccgcggcggcatcctc
gacgtcttccccccgacggaaccgcacccgctgcgcgtcgagttcttcggcgatgagatc
gacgagatcaggtccttctcggttgccgaccagcgctcactcgaggtcgtcgacgaggtc
tatgcgccgccctgccgggagatcctcatcgatgaggccgtccgcgagcgtgcccgccgg
gctgcagacagcctgccgggtgcccgggacatgctcgagaagatcgcgcagggcatcgcc
gtcgaggggatggaatcgctcgcgcccgtcctcaccgagggcatgcacccgatccacgag
ctcttcgaccccgcctcacgcgtcgtcgtcgtccagcccgagcgggtcttctcccgcagc
caggatcttgtcgcgacgacggaggagttcctggcggccgcgtggtcgtcggccgccgcc
ggcggcgacgtccccctcaccgtctcggacgcgtccttcctcgagatcgaggatgtcggg
cgggcgattcggggccggggtatggcgtggtggagcttcggcggcttcaccggtgatcag
gagctcgacagcacgaagcgggctgtcgaggcgcaggagccgaagccgttccacggcgac
gttgatgccgcgctgagtgagatggggatgctggccgcgcagggctggtggccgaccatc
gtcgtcgagggcggcggcctcggccgccgcatcgcctccgagctcaataagcaggatatt
ccggctgagttcgtcaccgagctcgaggagatccccggcgtcgtgacgatcacggcggcc
ccgatctcgaccggcttcatcatccccggcgtcaggctcgccgtccttgcggcctcggat
atcaccggccgcggcggctcctcgacgaaggacatgaggaagatgccgtcgcgcaggcgc
gcgaccgtcgatccgcttcagctcaagcccggtgactacattgtccacgaccgtcacggt
gtgggccgcttcctgcggatggactcgcgtccgatcgacggcaccgatggtgcgatgcgc
gagtacctcgttgtcgaatatgcgccctcgaagcgtggcatgcccggcgatcagctgtgg
atcccgacggactccctcgatctcgtgtcccgctactccggttccgaggcgccccaggtg
tcgaagatgggcggggcggactgggccaaggcgaaggcgaaggcccggaaggcgaccgag
cagatcgcgggcgagctcgtccgcctctacgcgacgaggaaggcgacgaagggtttccag
ttctcgccggacaccccgtggcagcgcgagctcgaggatgcgtttgcgtatgtcgagacg
cccgaccagctcgtcacgatcgacgaggtcaagcgggacatggaatccccgaccccgatg
gatcggctcatctccggcgatgtcggctacggaaagaccgagatcgcgatccgggccgcc
ttcaaggccgtccaggactcgaagcaggtcgccgtcctcgtgccgaccacactgctcgtc
tctcagcacctcgagaccttccaagagcgctacgcgggattcccggtcacggtggcggga
ctgtcccgcttccagtccgaggaggaatccgagaaggtcaaggccgggatcaaggatggc
tcgatcgatgtcgtcgtcggcacccaccggctgctgaccggctcgatctccttcaaggac
ctcggccttgtcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagaccctc
acccagcttcgcgcgaacgtcgacgtcctgtcgatgtcggccaccccgatcccgaggacg
ttggagatggcggtgacaggcatccgcgagatgtcgacactggcgactccgcctgaggag
cgccaccccatcctcacctacgtgggcccctacgaggagaagcaggtcagcgccgcgatc
cgcagggagctcctgcgcgacgggcaggtcttctacgtccacaaccgggtccagtcgatt
cgggcccaggcgaagaaggttgaggagctcgtccccgaggcccgcgtcgcggtcgcccac
ggcaagatgagcgagaagcagctcgagaccgtcatccaacagttctgggaccgcgaggtc
gacgtgctcgtctgcacgacgatcattgagacgggcctcgacatctccaacgccaacacc
ctcatcgtcgacaacgccgagcgcctcggactgtcccagctccatcagctgcgcggcagg
gtcgggcgcggccgcgaacgcgcctacgcctacttcctctacccgccggacaaggcgatg
acggagaccgcggtggcccgcctgcggaccatctcctcgcacacccagctcggctccggc
atccaggtcgccatgaaggacctcgagatccgcggggcgggcaacctcctcggcggggag
cagtccggccacatcgccggagtcggcttcgacctgtacgtgcggatgatcgccgaacag
gtggaggccatgcaggcgatgctgaccggcggccggaaggacgagcccgagccgccgccc
atcaagctcgatctgccgatcgaggcgaccgtgcccgactcgtacgtgccgcaggagggc
ctgcgcctcgacatctactcgaaggtcgccaactcctcgaccgaggaggagcgcgaccag
atccgcgccgagctcgtcgaccggtatggtccgatcccgcccgcggttgagcgcatgttc
ctcgtcgcccagatccgggagacgatgcgggctgcaaagctcgaggatgcggtcgtccag
ggcgagtacctgcggctctacccggtcgccctgcccgattcgaggcagatgaggctcaag
cgcctccatccccgcgccgtcgtgaagcctgccgtgcgctccgtcctcgtccccctgccg
gtcacgggcaaaggcaggctcggctcagctcccgagccggtcatgaacgaggacttcggc
gactggttcgcggacctcatgagggccgtgttcctgcccgacgcggagggccggggtggc
aacagccccgacgccgcggtcggctga
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