Candidatus Fukatsuia symbiotica: CCS41_01300
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Entry
CCS41_01300 CDS
T06003
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fsm
Candidatus Fukatsuia symbiotica
Pathway
fsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCS41_01300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fsm03019
]
CCS41_01300
03400 DNA repair and recombination proteins [BR:
fsm03400
]
CCS41_01300
Enzymes [BR:
fsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCS41_01300
Messenger RNA biogenesis [BR:
fsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCS41_01300
DNA repair and recombination proteins [BR:
fsm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CCS41_01300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AWK13444
UniProt:
A0A2U8I6F0
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All DBs
Position
complement(264152..265990)
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AA seq
612 aa
AA seq
DB search
MTDREQQTVKILRDIFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVMK
GLTLVVSPLISLMKDQVDQLLAHGVTAACLNSTQTWEQQTKVMTGCRNGQIRLLYIAPER
LVMENFLEQLPHFSPVLLAVDEAHCISQWGHDFRPEYRALNQLKLRFPSLPVIALTATAD
ETTRSDIARLLNLHQPLIQISSFDRPNIRYTLIEKFKPLDQLWRFISTQQAKCGIVYCNS
RAKVDKTTELLQNRGLSVAAYHAGLDNQLRAQVQEAFQRDDLQIVVATVAFGMGINKPNV
RFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMVWLRRCLEEKPAGEQQNIER
HKLNAMVAFAETQTCRRLVLLNYFGEYQQQSCGNCDICLDPPKRYDGLVDAQKVLSCVYR
VGQRFGAGYVVEILRGANNQRIRTLGHDKLSVFGIGREQAAEHWTSVLRQLIHLGKLRQN
IEMFSALQLTEAARPILRSEIPLSLAVPRIQDFKPRRNAKNQKSSGGHKVYKNQTVSDGE
LFAKLRKLRKSMADEANIPPYVVFNDATLLEMSEKIPITSRDLLSVNGVGQRKLERFGAA
FIKVIRKHLNDS
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
gtgacagacagggaacaacaaaccgtaaaaatattacgcgatatcttcggctatcagcaa
tttaggccaggacagcaagaaattatcaacgctactttgtcagggcaagattgcctggtc
gtgatgccaactggtggtggcaaatctttatgctatcagatccctgcattggtaatgaaa
ggtttgactctggtcgtttctcctttgatttcattgatgaaagatcaagttgaccagtta
ttggctcatggtgtcactgctgcctgtttaaactctacccaaacctgggaacaacaaacg
aaagtaatgaccggctgtcgtaacggtcaaattaggctgttgtatatcgctcctgaacgg
ctagtaatggaaaattttctcgagcaattgccacatttttcaccggtgctgttagcggta
gatgaagcacattgtatctcacagtgggggcatgattttcgaccagaataccgcgcttta
aatcagctaaaattgcgctttcccagtttgccagtgattgcactgacggcaacagcggat
gaaacgacacgtagtgatattgcccgactactgaatttgcatcaacccttgattcagatc
agtagttttgaccgtcctaacatccgttataccttaattgaaaagtttaaacccttggat
caattgtggcgctttattagcactcagcaagcaaaatgcggtattgtttattgtaacagc
cgagcaaaagtggataaaacgaccgagctcttacaaaatcgtggattaagtgtggcagcc
tatcatgctgggctggataatcagctccgagcgcaagtgcaggaggcttttcaacgcgac
gatctgcagatagtcgtagcgacggttgcttttggcatggggatcaacaaaccaaacgtg
cggtttgtggtacatttcgatattccacgcaccatcgaatcttactatcaagaaacgggt
cgtgccggacgcgatgggctgcccgccgaagccatgttgttgtatgatccggcggatatg
gtatggttgcgtcgttgcctcgaggaaaaaccggccggtgagcaacaaaatattgaacgt
cataaattgaatgcgatggtggcgtttgccgaaacacaaacctgccgccgtctggtgttg
ctcaattatttcggtgaatatcagcagcaatcttgcggcaactgtgatatttgtctcgat
cctcctaaacgttatgatggcctggtcgatgcacaaaaggtgttgtcttgtgtctatcgg
gtaggccagcgcttcggagcaggctatgttgttgaaatattacgcggtgcgaataatcag
cgcattaggaccctgggtcatgataaattatcggttttcggtattggtcgtgagcaagca
gcagaacactggaccagtgtattacgtcaactgattcatttaggcaaactgcgtcaaaat
attgagatgttttctgcgctacaactgactgaagctgctcggccaatattacgctctgaa
ataccgttatcgctggcggtgccgcggatccaggatttcaaacccagaagaaatgctaaa
aaccagaaatcctccggtggccacaaggtttacaaaaaccaaaccgtcagtgacggtgag
ctgtttgccaaattacgtaaattgcgtaaatcgatggctgatgaagcaaatattccacct
tatgtcgtatttaacgatgctactttgttggaaatgtcagaaaaaataccgatcactagc
agggatttgttgagtgttaatggcgtagggcagcgcaaactggaacgttttggtgctgct
tttatcaaagtgatacgcaagcatctcaacgactcataa
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