Francisella tularensis subsp. holarctica F92: F92_03690
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Entry
F92_03690 CDS
T02349
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fts
Francisella tularensis subsp. holarctica F92
Pathway
fts03030
DNA replication
fts03410
Base excision repair
fts03420
Nucleotide excision repair
fts03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F92_03690
03410 Base excision repair
F92_03690
03420 Nucleotide excision repair
F92_03690
03430 Mismatch repair
F92_03690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fts03032
]
F92_03690
03400 DNA repair and recombination proteins [BR:
fts03400
]
F92_03690
Enzymes [BR:
fts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F92_03690
DNA replication proteins [BR:
fts03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F92_03690
DNA repair and recombination proteins [BR:
fts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F92_03690
NER (nucleotide excision repair)
GGR (global genome repair) factors
F92_03690
MMR (mismatch excision repair)
DNA ligase
F92_03690
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F92_03690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFX70377
LinkDB
All DBs
Position
660824..662860
Genome browser
AA seq
678 aa
AA seq
DB search
MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL
VNDNPQFKPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFK
INNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQIVEMPTNCPV
CDSKIENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAANLIKY
PADIYKLNFEQLTGLERMAAKSSQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALAN
HFGSLESFRDAKFEELIEINYIGEIIANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVE
HAYNESFTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTK
AQELGVEVILEDNLKDLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccaaacgaatttttttctataaaatatcatattttagctaaagcagaattaaaa
gcttacatagacaaattagctgattatcttagtcaacagagctatttgtatcatacctta
gataagccaattatttctgactctgattatgataagctgtttagattacttcaagattta
gttaatgacaatccccaatttaagccgataaattcagtattagatcgtgttggaggtgag
gttttagcagggtttgaaactatcaagcataaaaagaaaatgacatctttggcaaatgtt
tttagtctagaggagttgcgtgatttttatgacaagatagagtatgatattgagcttgaa
tgtgaaccaaaaatggacggtctagcaatcagcattttttataaaaatggtaagtttgat
tatgctgttacacgtggtgatggtattcagggtgaaaaagtttcagaaaatgttaaaact
atccgcaatgtcccacttaaactaaatacttcaaaccctccagaagaactagaagttcgt
ggtgagattatcttagataagcaaagttttctatctcttaatgagtatatgcaaactcat
gagaataaaacttttgcaaatccgcgaaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcaaagcgaccacttaagctttatagctatggtattggctatttttct
aaagactttgtatatcctgaaacccagtttgaactaatgcagctactccaaagttttggc
tttacaattagtgataatatgtttttggcaaaaaatttctcagaggttgaggagtatcac
cataagatgagtcatcagcgtgctgatttagcttatgatattgatggtttagtttttaag
attaataatattaaactacaagatacaattggctacactgctagaggacctaagtgggct
atagcatataagttcccagctgaagaggtggagtcagaagtgctaaatgtagaattccaa
gttggcagaacaggagcaattacgccagtagcaagacttaagccagtcgcagttggcggc
gtaatagtttcaaatgcaaccttgcacaatatcaatgaaattaaacgcaaagatatccga
gttggtgatagagtaatcgtacgtagagcaggagatgtaattccagaagtggtcaaaagc
ttaccacaatatcgtaagtctgatgcacagatagttgaaatgccaacaaattgtccagtt
tgtgattcaaagattgagaatgttaatgatcaggctatatatcgttgtacaggaggatgg
cattgtcaggcacaaactactgagcgcttgaagcacttcgtctcacgtaaagcaatggat
attgataagcttggagctaaactaattgaacaacttgttgctgcaaatttaattaagtat
cctgctgatatttacaaactcaattttgagcaattgacaggcttagaaagaatggctgct
aaatcatcacaaaatgtcttagactctatcacaaaaagtaaagagccaagtttagcaagg
tttatttttgcaatagggattaaagatatcggtgaagtatcatcagacgctttagcgaat
cattttggtagtctagagagcttccgtgatgctaagtttgaggagctaatagagattaat
tatattggtgagattatagctaataatattgtttcattttggcatgattctctaaatatt
aagattgtagaagagtttttagctattgggattaagatacaaaatccagtaaaagttgaa
cacgcctataacgagagcttcacaggtaaaactgttgttattactgggtcttttgagaac
tatggtcgtacagaacttacacagcttcttaagtcaatcggggcaaaagttacctcaagt
gtttctaaaaaaactgacatggttatttgtggcgataatgctggtagcaaacttacaaaa
gcccaagaattaggtgtagaagttattcttgaagataatctgaaagatttattatga
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