Fragaria vesca (woodland strawberry): 101298717
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Entry
101298717 CDS
T02666
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03030
DNA replication
fve03420
Nucleotide excision repair
fve03430
Mismatch repair
fve03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101298717
03420 Nucleotide excision repair
101298717
03430 Mismatch repair
101298717
03440 Homologous recombination
101298717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fve03000
]
101298717
03032 DNA replication proteins [BR:
fve03032
]
101298717
03400 DNA repair and recombination proteins [BR:
fve03400
]
101298717
Transcription factors [BR:
fve03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101298717
DNA replication proteins [BR:
fve03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101298717
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101298717
MMR (mismatch excision repair)
101298717
DSBR (double strand breaks repair)
HR (homologous recombination)
101298717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
C1_2
Motif
Other DBs
NCBI-GeneID:
101298717
NCBI-ProteinID:
XP_004301112
LinkDB
All DBs
Position
LG5:complement(7599808..7603239)
Genome browser
AA seq
606 aa
AA seq
DB search
MAKLGPTPDAISTLLANPSPDGSSPIPEIVVQILDLRRNGNRYMFTASDGKMKLKGILNS
DMSSMVDSGDFQNLSLVRILEYTVNDIPGKPEKCMIVIKCEMVSPPLEAEIESEVSKNEV
KGEQVGIILKPKQEMVTKSANQIMHEQNGNMAPAARMAMTRRVHPIVSLNPYQGNWTIKV
RVTNKGPMRTYTNARGQGCVFNVELTDEDGTEIQATMFNEAAKKFFEKFELGKVYYVSKG
SLKLANKKFSTLKNDYEMTLNENSEVDEVCNEEAFVPETKFDFVPIDMLGPHVNQKVLVD
VIGVVTSVSPTMSIRRKSNNESIPKRDITIADESKKVVVVSLWNDLATGVGQELLDKVNQ
SPVVAIKSVRVGDYQGVSLSTVSKSSIVVDPDLPEAKRLKSWYDSEGKEVSMASVGSGMS
PSANSGAWSMYSDRIPLSHLKDNPSLGEDKPVFFSVKAYIGPIKSDQTLWYRACKVCNKK
VTEGDGGYWCEGCQKIAEECSLRYILLARAMDATGEVYLSMFNNEAEKIIGCSADELDKL
RSEEDNEYQLKLKQAAWVPHLFRVSVVQNEYNDQKRQRVTARAVAPLDFAAESKYMLEEI
SKMKAS
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcttggaccaaccccagatgcgatttcgacgctgttggcgaacccatcgccg
gacggatccagtccgatcccggagatcgtggtccagatcctcgatctcagacgtaacggc
aaccgttatatgtttactgctagtgatgggaagatgaagctaaaggggattctcaactca
gatatgagttcaatggttgactctggggattttcagaaccttagcctcgttcgtattctt
gagtacactgttaatgacattcccggcaagcctgaaaaatgtatgattgtgataaaatgt
gagatggtttcgcctcctcttgaggcggagattgagagtgaggttagtaaaaatgaggtg
aaaggagagcaggttgggattattttgaagcccaagcaagagatggtgactaaatcagcc
aatcagattatgcatgagcagaatggaaatatggccccggctgcacgaatggccatgacc
agaagggttcatcctattgtgtccttgaatccttatcaaggcaattggactataaaggtt
cgtgtaacaaacaagggacccatgcgtacttacacgaatgctagaggtcaaggctgtgtt
ttcaatgtggagttaacagatgaagatggaactgaaattcaagctacaatgttcaatgaa
gctgcaaagaagttttttgaaaagtttgaattggggaaggtttactatgtttcaaagggg
tctctaaagctggctaacaagaagtttagcacattaaaaaatgattatgaaatgacttta
aatgagaattctgaggtggatgaagtctgcaatgaagaagcttttgttcctgaaacaaaa
tttgattttgtcccaattgatatgctgggcccccatgttaaccaaaaggtgctagtggat
gttattggagttgttacaagtgtgtctcctacaatgagtattagaaggaagagcaacaat
gagagtatcccaaagcgtgacattaccattgctgatgagtcgaaaaaagtggttgtggtt
tctttatggaatgatcttgcaactggtgttggccaggaattgctggacaaagtcaatcaa
tcgcctgtagtcgctatcaaatccgttagagttggagactatcaaggtgtatccttgtct
acggtgtccaagagctcaatagtggtggatccagatttacctgaagcaaagaggttgaaa
tcctggtatgattctgaaggtaaagaggtttcaatggcatctgttggctctggtatgagc
ccatcagccaatagtggagcatggtccatgtactctgatagaatccccctgtctcatttg
aaagataacccatccttgggagaggacaagcctgtgtttttcagtgttaaagcttatata
ggccccatcaagtctgatcagactctctggtaccgggcttgcaaagtatgcaacaaaaag
gtgactgaaggtgatgggggttactggtgtgaagggtgccagaaaattgctgaagaatgc
agtctaaggtatatattacttgcaagagctatggatgcaactggtgaagtatatctttca
atgttcaataatgaagcagagaagattattgggtgctctgcagatgagctagataaattg
agatcagaggaggacaacgagtaccagctgaagttgaaacaagctgcttgggttcctcat
cttttcagggtcagtgttgttcagaatgaatacaatgaccagaagaggcaaagggtaact
gccagggcagttgctccacttgatttcgctgctgaatccaaatatatgctggaagagata
tcgaagatgaaggcctcttaa
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