KEGG   Fragaria vesca (woodland strawberry): 101311924
Entry
101311924         CDS       T02666                                 
Name
(RefSeq) histone deacetylase 19
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03082  ATP-dependent chromatin remodeling
fve03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    101311924
   03083 Polycomb repressive complex
    101311924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:fve03036]
    101311924
Enzymes [BR:fve01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     101311924
Chromosome and associated proteins [BR:fve03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     101311924
   HDAC complexes
    Sin3A-HDAC complex
     101311924
    BRAF-HDAC complex
     101311924
    REST complex
     101311924
    SHIP complex
     101311924
    MiDAC complex
     101311924
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     101311924
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    101311924
  Chromatin remodeling factors
   NuRD complex
    101311924
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 101311924
NCBI-ProteinID: XP_004290100
LinkDB
Position
LG2:8294096..8298127
AA seq 495 aa
MDTGGNSLASGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPYPARDRDLCRFHADDYVAFLRNITPESQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGICDISINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGI
DDESYHYLFKPLIGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGAEIEDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSHQLLEEIRSKLLENLSRLQHAPSVQFHERPPENEIPEEDEDQEDRDERWDADSDMEL
DNERKPLPPSRVKKEIVEPEVKDPKGAAENSRAYDDAGLDEITTSAKALDMGSGSMEEPS
VKVEQESLNKPADQM
NT seq 1488 nt   +upstreamnt  +downstreamnt
atggacaccggcggcaactcgctggcgtcaggccccgacggcgtgaagcgcaaagtgagt
tacttctacgacccagaagtcggaaattactattatggacaaggccacccgatgaagccc
caccgcatcagaatgacccacgccctcttagcccactatggtcttctccagcacatgcag
gttctcaaaccctacccggcccgggaccgagacctctgccgcttccacgccgacgattac
gtggcgtttctccggaatattacccctgaatcgcagcaggaccagcttaggcagttgaag
aggtttaatgttggggaggattgtcctgttttcgatgggttgtattcgttttgtcagact
tatgccggtgggtctgttggtggggctgtcaagctcaaccatgggatttgtgacatttcg
attaattgggctggtgggttgcatcatgctaagaagtgtgaggcttccgggttttgttat
gtcaatgacattgtgcttgcaatcttggagcttcttaaacaacatgagagagttttgtat
gtggacattgatatccaccacggagacggtgttgaggaggcgttttacacaacagacagg
gtcatgacggtttcgtttcataaatttggagactatttcccggggacgggggatattcgc
gatattgggtacggaaaaggaaagtattactcactgaatgttccgttggatgatgggatt
gatgacgagagctaccattacttgttcaaacccctgattgggaaggttatggagattttt
aggcctggtgctgttgttctacagtgtggcgctgattccttatctggggataggcttggt
tgctttaatctttcaatcaagggtcatgctgaatgtgttaaatacatgagatccttcaat
gtccccctcttgcttctagggggtggtggctatactatccgtaatgttgctcgttgctgg
tgctacgagacaggggttgctcttggagcagaaattgaggacaaaatgccacaacatgag
tattacgagtattttggtccagactatactcttcatgttgcccctagtaacatggaaaac
aagaattctcatcagttgctggaagaaatacgatcaaaacttcttgagaacctctccagg
cttcagcatgcacctagtgtccaatttcatgaaaggcctcctgaaaatgagattccagag
gaagatgaggatcaggaggacagagatgagagatgggatgccgattcggacatggagctt
gataacgaacgaaaacctttaccaccaagcagagtaaagaaagaaattgttgaacctgag
gttaaagacccgaaaggagccgcggagaactctcgagcctatgatgatgctggactggat
gagattacaacaagcgcaaaggctttggatatgggctctgggtctatggaagaaccaagt
gtgaaagtggaacaagagtctctaaataagcctgcggatcagatgtaa

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