Gossypium arboreum (tree cotton): 108468739
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Entry
108468739 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: helicase protein MOM1-like
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108468739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gab03036
]
108468739
Chromosome and associated proteins [BR:
gab03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108468739
Chromatin remodeling factors
NuRD complex
108468739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Chromo
SNF2-rel_dom
Helicase_C
PHD
zf-HC5HC2H
pXO2-72
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
108468739
NCBI-ProteinID:
XP_017625090
LinkDB
All DBs
Position
3:88944635..88960984
Genome browser
AA seq
2168 aa
AA seq
DB search
MTSPVKRKSEQIEKQKNLSPLSRSERDKMLSSSGSLGSKNSDKSPGSFDRKRKKEENSVK
PLTTRSVEVKHNEQEDGQGEAQKKRMDARAYRALLRKTPQQVYRADHCGDLNRTDCGNRE
VELLEKLTERTSERSVVASTNQSVKGAFEHKSFSTCQKDSCKDMSSTKDVPQIVKNRLVD
GEVNDDAGKAMQENLRSPKVNCGSKKQETCSFNANQLFGSSDTKDRGEPDAGISTGHTEK
PCSPMQQCISSADLQTCNDQNTCIVCKLDGKLLRCHGKGCQRSYHLSCLEPPLEEFHLGV
WYCLSCVRKKLESGVHSVSEGIEAIWDSRELEALEDGLRGQKQYFVKYKGLAHVHNCWLP
ENQVLLEAPSLVAKYNRKNQGSVWKQHWAVPHHLLQKRLFITKDCDRHCNGHDDDKLCCH
VEWLVKWCGLGYEHASWELDNASFFRCPEGQSLIRDYETCFKKGKKSSKFKDRAGTSLKF
SQLPAGVSSGIDANLDSVSKLSNHWPRSQNAVIFDNQERIPNVISFIMSFPSDKSRPFLI
ISTSTLLYLWDEEFLRLEPATDVVVYSGSKEIRNSIRNLEFYEEGGCVMFQVLITSPEVV
SEDLNVLDCIGWEVIVLDECQRPTIASCFEQIKMLTASKRLLIISSQLKDNVVEYLNLLS
LLDSESDSNGSDSLQMTSSDNIAILKERLAKYVAYESSRFVEYWVPVLLSNPQLDQYCFT
LLSNSLSLCSPSKTDPVGALRNILITSRKCCDHPYVVDESLQMRLTKGLKDVEFLDVGIK
ASGKLQLLDAILLEIKKRELKVLVLFQYTGGSGRDLMGDILDDFLRQRFGADSYERVDGG
VTPSRKQSALNKFNNERKRFVFLLETRACLSSVKLSAISTVVIFGSDWSPVNDLRALQKI
TLDSHFEEIKVFRLYSAFTVEEKILMLSKQDKTLDSNIVNISPSSSHMLLKWGAPYLLSQ
LEKIHGIPALDASNLPEQSLLKDVIQEFFILLSQTGIDNDASKLSLILQAKQNQGMYRTE
MPLFGEQKIQVMNEDPPHIFWTKLLXXXXPRWKYCSSFQRNRKRGQYLDDVQKKSEVESA
EVVKRRKVVNDGNDHPSPKHGLQEDRQGSSGTSVSPLSKLADPVSDKIHATNSIDLANDI
SETPSLNMVEWERRRKQLDSQKTLYVILWPQIAKLCEVLHLSEGVRDLAGKFLEYVMNNH
LVNREPETILQAFQISLCWCTASLLKQKIDHKESLALAKQHLGFTCKKEEAAYVNSLLRC
LKRMFVYRTGCLKVSNSSKDSELSSKADGNTEDKDSLRFQEASDAQVIAASGVSREFQLA
QRDLVKSINESEKKFDKQLTKLTEKQKEEMKQLKKKYEEEKALLENKKQTEAAVIRLHSN
ALMRTNKIKNLDIEYARKFDELKQRMDIDLKNLEASQVAARSNVLERKTRWVEAVKSWAR
VELVKPPISKANLPKGSSSSSVQSAEGNEVRLSEVLLDKVDPIYMAGPCKENSKVALIEE
GNKTVCLGVGEEHAIYKDSCPKELVSVGEIPNVAVQVPPTVSSGDVTESVLSLRRLDEDQ
ISDEYKLKMSNGNPETVSPTDALENVVPIEACSREEIPNGTTLSKPNTEVPLKTAKSVII
CEGEDNLASVQVPSSEINSDIYKLTKVDGEVTLKEPLVANFNAGQETHVSAEAPSSEKIP
DGAALGKAVGDICLRTSKIVNSSGGQENVLLLEAPSPGENPVRTTLSNLDGEVHLRAAET
VSSREDHENLPSSVAPSSEKISCGATLTMVEGELALNASEVCQGNIISVNTLSEKEILGG
ATLNVVDGEVPNISSEIASSSDDMNNVVCTNPSTSKEQEQIPDTAALSMPAEEISLAEPE
TACSELLEGGSAHRENDGTCAIEIDRLDGILCFMNLEPEFQERSLADPSSLQAVADLVSP
NVGSLPYVSSGIQTRDVANNEMRNASQVAETLPSNGAVDVTCNVSNPDTQQLGSTESILN
LSPDLPSVSATENQPSNDGQHANLISQAQRQSITNHIEMSSQDVLQPLHSPINGTIGQHL
RQVSETSTASVPSVSRGHPLQTAPPVSSRMPLLLYPDPLKNEMERISQERDQTIKVHEDT
KLQLKFECEKEIEEIAAQVRRKYEVKLQEKETEFLIRKEELDVNYNKVLLNNILAEAFRS
KCMDSRAS
NT seq
6504 nt
NT seq
+upstream
nt +downstream
nt
atgacttccccagttaagaggaaatctgagcaaattgaaaagcagaagaatttgagtcct
ctgagcaggtctgagagggataagatgctctcctcatctggttctttgggatcaaagaat
tctgataagagtcctgggtccttcgatagaaaaaggaagaaagaagaaaacagtgtgaaa
ccattgactacgcgaagtgtagaagttaaacacaatgagcaagaagatgggcaaggtgag
gcacagaagaagaggatggatgctcgtgcctatagagcattgttaaggaaaacacctcag
caagtttatagagctgatcattgcggtgatctgaacagaactgattgtggaaacagggag
gtggaacttttagaaaaactcaccgagagaactagtgaaaggtctgtggtggcaagtaca
aatcaatctgtaaagggagcatttgagcataaatcattttctacttgccaaaaggatagt
tgcaaggatatgtcttcaacgaaggatgttccacaaattgttaagaatcgtttggtagat
ggagaagttaatgatgatgctggaaaggccatgcaggaaaatctgcgaagtccaaaggtc
aactgtggttcaaaaaagcaggagacttgctcttttaatgcaaaccagttatttggatcc
tctgatactaaggatagaggggaacccgatgctggtattagcacgggacacactgaaaag
ccctgtagtcctatgcaacaatgcatctcctctgcagatcttcaaacatgcaatgatcaa
aatacttgcattgtatgcaaacttgatgggaagctcttacgctgtcatggaaaaggttgt
caaagaagttatcatctttcgtgtctagaacctccccttgaggagttccatcttggagtt
tggtactgtctatcatgtgtgaggaaaaaattagaatcaggggtgcattcggtttcagag
ggaatagaagcaatttgggattctagagaactagaggctttggaggatggattgcgagga
cagaagcaatattttgtgaaatacaaaggtcttgctcatgttcataattgttggttacct
gagaaccaggtgttgcttgaagctccatcacttgtagctaaatataacagaaaaaatcag
ggttctgtgtggaagcaacactgggcagtgccacatcatttgctacagaaaagattgttc
attaccaaggattgtgatcgtcattgtaatgggcatgatgatgataagttatgttgtcat
gttgagtggcttgtgaaatggtgtggtcttggttatgagcatgcttcatgggagttggat
aatgcttcctttttccgttgtccagaaggccagagccttatacgagattatgaaacttgt
ttcaagaagggaaagaaatcttctaaatttaaggacagagcaggtacatctctaaagttt
tctcaattaccagctggtgtttcatctggaatagatgctaatcttgattctgttagcaaa
ctaagcaaccattggcctaggagccagaatgctgtaatttttgataatcaggaaaggatt
ccaaatgttatttctttcattatgtcttttccatctgacaagtcaaggccttttctcatt
atctcaacttccactttactatatctatgggatgaggagttcttgcgtttggaaccagct
actgatgttgtggtttatagtggcagtaaagaaattcggaatagcattaggaacctggag
ttttatgaagaaggaggttgtgtaatgtttcaagtacttataacctcacctgaagttgtc
agcgaggacttgaatgtgcttgattgcataggatgggaggtaatagtactcgatgaatgc
caacgtccaacaattgcttcatgttttgaacaaattaagatgttaactgctagtaagagg
cttctgattatcagcagtcaactgaaggataatgtggttgagtaccttaatcttctttct
ctgcttgattctgagagtgattcaaatggtagtgacagcttgcaaatgacttcaagtgat
aatattgctattttgaaggagaggttggcaaagtacgtcgcttatgaatcatctaggttt
gtagagtattgggttcctgtactcttatccaatccacagctggaccagtattgctttact
ctactttcaaactctctctcactgtgttcaccttcaaagactgatcctgtaggagctctc
cgtaacattcttatcaccagcagaaagtgttgtgatcatccttatgttgtggatgaatcc
cttcaaatgcggctcactaaaggccttaaagatgttgagtttttggatgttggcataaaa
gcaagtggcaaattacaactacttgatgcaattcttttggagatcaagaaacgagagtta
aaagtgcttgttcttttccagtacactggtggttctggaagggatttaatgggagacatt
ttggatgactttctgcgccaaagatttggtgcagattcttatgaacgcgtagatggtggt
gtcaccccttcaaggaagcaatctgctttgaataaattcaataatgagaggaagagattt
gtcttcttattggaaactcgtgcttgtctttccagcgtcaaattatctgcaatcagtacc
gtcgtaatatttggaagtgattggagcccagtgaatgatctaagagcattgcagaagata
acacttgattctcactttgaagaaataaaagtatttcgtttatattcagcatttactgtg
gaggaaaagattttgatgctttcaaaacaagacaagacacttgatagcaacatagtgaac
ataagccctagtagtagtcacatgctgcttaaatggggggctccgtacctacttagccag
ttggaaaaaattcatggtatcccagccttggatgcaagtaacttgcctgagcaatcactt
ctgaaagacgtgattcaagagttctttatcttactgagtcaaactgggatagacaatgat
gcaagcaaattatccctaattttacaagccaaacaaaatcaaggaatgtataggacagaa
atgccattgtttggcgagcagaaaatccaagtgatgaatgaagatccacctcatatattt
tggacaaaacttttgannnnnnnnnntccgaggtggaagtattgttcttcgtttcagagg
aaccggaaaaggggtcaatacctcgatgatgtccaaaagaaatctgaggttgaaagtgct
gaagttgtaaagagacgcaaggtggtcaatgatggaaacgatcatccctctccaaaacat
gggctgcaagaggacagacaaggaagctcaggaacctcagtatctcctttgagtaaattg
gctgatcctgtgagtgataaaattcatgcaaccaactcaattgatctggccaatgatatc
tcagaaacaccatctcttaacatggtagaatgggagagaagaagaaaacagcttgattct
cagaagactctctatgttattttgtggccacagatagcaaaactatgtgaagttctacat
ctctcagagggtgtgagggatttagctggaaagtttcttgaatatgtcatgaataaccat
ctggtcaatagggaaccagagaccattttgcaggcatttcagatttctctgtgttggtgt
acagcttctttgttgaagcagaaaattgatcataaagaatcacttgcacttgcaaagcag
catcttggctttacctgcaagaaagaagaggcagcctatgttaattcattgctgcggtgt
ctgaagagaatgtttgtatatcgtacaggatgtttgaaggtttcaaattcttccaaagat
tctgaattatcaagtaaagctgatggaaacacagaggataaagattcattgaggtttcaa
gaggcttctgatgcacaggtcattgcagcgtctggagtgtcccgagaatttcaattggca
cagagagatcttgtaaaaagcatcaacgaaagtgagaaaaaatttgataagcagttgaca
aaactaactgagaagcaaaaggaggaaatgaagcaacttaaaaagaagtacgaggaagaa
aaagctctgctggagaacaagaaacaaacagaagcagctgttatccgtttgcacagtaat
gccttgatgaggactaataagataaaaaatttggatattgaatatgctaggaagtttgat
gaactaaaacagaggatggatatagaccttaagaatctcgaggcatcgcaggtggcagca
agaagcaatgttttagagagaaagactcgttgggtggaagcagttaagtcctgggctagg
gttgaattagtgaagccacctattagcaaggctaatcttcctaaaggaagttcttcaagt
tctgttcaatctgccgaaggaaatgaggtaagattgtccgaagttcttctggacaaagtt
gatcccatttatatggctggaccctgcaaggagaattctaaggtagcattaattgaggag
ggcaacaaaactgtctgtttgggtgttggtgaagaacacgccatctacaaagattcgtgt
cccaaagaactggtttctgtaggagaaattccaaatgtagcggttcaagttccaccaact
gtcagttcaggtgatgttaccgagagtgtcctttctcttagacggttggatgaagaccag
atttctgatgaatataaattgaaaatgtcaaatggtaatcctgagactgtttctcctact
gatgctctggagaatgttgttcctattgaagcatgctctcgtgaagaaattcctaatgga
accactttgagcaagcctaacacggaggttcccttgaaaacagctaagagtgtaattatc
tgtgaaggggaggataatcttgcctcagtgcaagtaccatcatctgaaattaattctgat
atatataaattaacgaaggttgatggtgaggttaccttaaaagaacctctggttgccaat
ttcaatgcaggtcaagaaacccatgtctcagccgaagcaccttcctctgaaaaaattcct
gatggagctgcattaggaaaggctgttggggatatctgcttgagaacatctaagattgtc
aattctagtggtggtcaggagaatgttctcttgttggaagcaccatcacctggagaaaat
cctgttagaaccacattaagcaatcttgatggcgaggttcatttaagagcagctgagact
gtcagttctagggaagatcatgagaatttgccatcttcagtggcaccttcatctgaaaaa
atttcttgtggggccacattaaccatggttgaaggggagcttgccttgaatgcatctgaa
gtttgtcagggaaacatcatttctgtgaacactttatctgagaaagagatccttggtggg
gccacactgaatgtggttgatggagaagttccaaacatctcatcagagattgcaagttcc
agtgatgacatgaataatgttgtctgcacgaatccctctacatctaaagaacaagagcaa
atacctgatacagctgcactttcaatgcctgctgaagagatctctttggctgaacctgaa
actgcttgtagtgaactcctcgaaggtggtagtgctcatagagaaaatgatggaacatgt
gccatcgaaattgatcggcttgatggcatactatgctttatgaacttagaacctgaattc
caagaacggtctctggcagatccatcttcattacaggctgtggcagatttggtatcccca
aatgtgggttctcttccttatgtttcctcaggaatacaaactagagatgttgcaaacaat
gaaatgcgaaatgcttctcaggtagctgaaactttaccatctaatggtgctgttgatgtg
acttgcaatgtgtccaatcctgatacacagcagttggggtccacagaatcaattttgaac
ctctctcctgatctaccttcagttagtgcaactgaaaatcaaccaagcaatgatggtcaa
catgctaacctaatttctcaggctcaaaggcaatcgataaccaaccatattgagatgtcc
agtcaagatgttttgcagccccttcattcacccatcaatggaaccattggtcagcatttg
aggcaggtttcagaaacaagtacagcttcagttccttctgtttccagaggccatcccttg
cagactgcacctcctgtatcatcccggatgcctttgctgttgtatcctgacccccttaaa
aatgaaatggaaagaatatcccaagaaagagaccagaccattaaggttcatgaagatacg
aagctgcagctgaaattcgagtgtgagaaggaaattgaggaaattgcagctcaggttcgt
agaaagtacgaagttaaacttcaggagaaagagacagaatttctgatccggaaggaggag
cttgatgtaaattataacaaagttctcttgaataatatattggctgaggccttcaggtct
aaatgtatggatagtagggcatct
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integrated database retrieval system
