Glaciecola sp. 4H-3-7+YE-5: Glaag_0056
Help
Entry
Glaag_0056 CDS
T01483
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Pathway
gag03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Glaag_0056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gag03400
]
Glaag_0056
Enzymes [BR:
gag01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Glaag_0056
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Glaag_0056
DNA repair and recombination proteins [BR:
gag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Glaag_0056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
CDPS
SBP
Motif
Other DBs
NCBI-ProteinID:
AEE21025
LinkDB
All DBs
Position
69480..70292
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVEVSRLGISPHLIGQQIKRVVVRHKQLRWLVPDEVHLAEGLRVNDVRRRAKYLF
IDTDAGSIILHLGMSGKLRIVNSDTPVIKHDHLDIVLANGVCLRFNDARRFGACLWQDVS
EPEIGMIAALGPEPLTADFDGQRLYDLSRTKSVAVKNFIMDNKVVVGVGNIYANEALFIA
GIDPRKAAKKVSKKTYLALGDIIKDVLAKAIEQGGTTLKDFTQADGNPGYFAQHLRVYGR
KGEACEVCASEIQSVTLGQRNTFFCEQCQT
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagttgaagtcagccgcttaggcattagccctcacttaattggc
cagcaaattaagcgggttgttgtgcgtcacaagcaattacgctggttggtacctgatgaa
gtacatctagccgaagggctgcgggtcaatgatgtgcgccgccgcgctaagtacttattt
attgatacggatgcaggcagcattattttgcacttaggcatgtcgggtaagttgcggatt
gtgaacagtgatacccccgttatcaagcatgatcatcttgatatcgtattagccaacgga
gtgtgcctgcgttttaacgacgcgcggcgctttggtgcttgcttgtggcaagatgtcagt
gaaccagagataggcatgattgcggccctcggtcctgagccactaacagcggactttgat
gggcagcgtttatatgatctttcccgcaccaagagtgtggccgtaaagaactttattatg
gataacaaagtggtcgttggggttgggaatatatacgcaaatgaagccttgtttatagcc
ggcattgatcccagaaaagcagctaaaaaagtcagcaaaaaaacgtacttggcgctcggt
gacattattaaagacgtcttggcgaaagccatagagcagggcggtacgaccttaaaagac
tttacgcaagccgatggcaaccctggatactttgctcagcacctgcgcgtgtatgggcgc
aaaggtgaagcatgtgaagtctgcgcgagtgaaatacagtcagttaccctagggcagcgt
aatactttcttttgtgagcagtgccaaacctaa
DBGET
integrated database retrieval system