Granulosicoccus antarcticus: IMCC3135_00360
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Entry
IMCC3135_00360 CDS
T04938
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
gai
Granulosicoccus antarcticus
Pathway
gai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMCC3135_00360 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gai03019
]
IMCC3135_00360 (deaD)
03009 Ribosome biogenesis [BR:
gai03009
]
IMCC3135_00360 (deaD)
Enzymes [BR:
gai01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
IMCC3135_00360 (deaD)
Messenger RNA biogenesis [BR:
gai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMCC3135_00360 (deaD)
Ribosome biogenesis [BR:
gai03009
]
Prokaryotic type
rRNA helicases
IMCC3135_00360 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
HEM4
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASJ70198
UniProt:
A0A2Z2NJZ2
LinkDB
All DBs
Position
complement(89481..91553)
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AA seq
690 aa
AA seq
DB search
MPDTNAVQHFSDLALPDAVLRAVQAVGYETPTPIQSRTIPPLVEGRDLLGHAPTGTGKTA
AFALPILARMDMNAQGVQALVLAPTRELAIQVAEAFAKYATHMKNLRVLPIYGGQDYTGQ
IRQLNRGVNVVVGTPGRIMDHMRRGTLKLDNLKTLVLDEADEMLRMGFIDDVEWILEQTP
PTRQMALFSATMPSVIRRIAAKHLTDPVEINVESTAATAASIRQRYWVVSGLHKLDALTR
ILEAETFDGMIVFVRTRTATTEIADKLSARGFAASAMNGDMPQKQREQMVNKLKKGQLDI
LVATDVVARGLDVDRISHVVNYDIPSDTESYVHRIGRTGRAGRTGDAILFVTQRERRLLG
TIERATRQKIEPLQLPTIEMVNNKRIADFKQSISDNLATGELSYLQRLIEDFSRDHDIPA
ERVAAALARMYLGDQPLILTDKNDHSERKAKQRKERDDRRPAAASERPERVRQDSRPVPS
RDSNPYSKPEAAAAAPQAAAKHTDSPVAKPASEPAEKAVVHQEVTDDSRASRRRAADEAA
MEMENFRVEVGETHGVKPENLMGAIANEAGLDAAFIGRIKIHDSYSTVELPSGMPKFLLK
DLKRIWVCERQLNMSKVSDSSAGSSAPSASRKPKSLDGGHKAPKKAASESGSKEKSGSGG
SNSAPKTDAKGEVRKKERHRDRKSKGKSGK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcccgataccaatgctgtacagcacttttcagaccttgcactgcctgacgccgtcttg
cgcgcagtccaagccgtaggttacgaaacacctacccccatacagtctcgtactattcca
cctctggtggaaggtcgggacctgctcgggcacgcgcccacaggaaccggcaagacggcc
gcgtttgccttgccaattctggctcgaatggatatgaatgcccaaggcgttcaagcactg
gttctcgcccccacacgcgaacttgccattcaggtagctgaggcatttgccaagtatgcc
acccacatgaaaaatctgcgggtgctgcctatctatggaggccaggactacaccggccag
atccgtcaactcaaccgcggcgtgaatgtcgttgtaggtacccccggacgcatcatggac
cacatgcgccgtggcactcttaaactggacaatctcaagaccctggttctggatgaagca
gacgaaatgcttcgtatgggattcatcgacgatgtcgaatggattctggagcaaacgcca
cccacccgtcagatggcgctgttctcagccaccatgccttccgtcattcgccgtattgcg
gccaaacacttgaccgatccggttgagatcaacgtagaaagcacagcagccacagccgcc
tcgattcgtcagcgctactgggttgtcagcggcctgcacaagcttgatgcactcactcga
attctggaagccgaaaccttcgacggcatgatcgtgttcgtcagaacccgaacggccacc
acagaaattgccgacaaactcagcgctcgtggctttgcagcctctgccatgaatggcgac
atgccgcaaaaacaacgcgagcagatggtcaacaagctcaagaaaggccaactggacatt
ctggtggccactgatgtggttgcccgtggactggacgtcgatcgcatcagtcatgttgtc
aactatgacatcccttccgacactgaatcctacgtccatcgcattggccgaacaggtcgt
gccggacgtactggtgatgcaatcctgtttgtcacccagcgcgaacgtcgcctgctgggc
accatcgaacgggctacacgtcagaaaatcgaacctctgcaattgccgaccatcgagatg
gtcaacaacaagcgcatcgcagatttcaagcaaagcatcagcgacaatcttgccactggc
gagctgagctacctgcaacgcctgatcgaagatttctcacgtgatcacgacattcctgcc
gagcgcgtcgcagcggcactggcacggatgtacctgggcgaccagccactgatactcact
gacaagaacgaccatagtgagcgcaaggcgaagcaacgcaaggaacgagacgatcgtcgt
ccagcagcagccagcgaacggccggaacgcgtcagacaggactctcgtccggtaccttca
cgcgattcaaatccgtacagcaagccagaagcagctgcggctgcacctcaggcagctgca
aagcataccgacagccctgttgcgaagcctgcttccgaacctgctgaaaaagctgttgtt
catcaggaagttactgatgattcgcgtgcctcccgtcgccgtgcagctgatgaagctgcc
atggaaatggagaacttccgcgttgaagtcggcgaaacccacggggtcaagcccgagaat
ctgatgggtgctattgccaacgaagccggactagatgccgctttcattggtcgcatcaag
attcacgacagctacagcacggttgaactgccatcgggtatgcccaagttcctgctgaag
gatctcaagcgcatctgggtctgcgagcgtcagctcaatatgtccaaggtctctgactca
tccgcaggcagcagtgcacccagtgccagtcgcaagcccaagtctttagacggtggtcac
aaagctcccaagaaagcagcttcggagtctggcagcaaagaaaaatctggtagtggcggc
agcaactcagcacccaagacagatgcgaaaggcgaagtacgcaagaaagagcgtcatcgt
gaccggaagagcaaaggtaagtctggcaaatag
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