KEGG   Gemmatirosa kalamazoonesis: J421_5987Help
Entry
J421_5987         CDS       T03025                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gba  Gemmatirosa kalamazoonesis
Pathway
gba03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    J421_5987
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gba03400]
    J421_5987
Enzymes [BR:gba01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J421_5987
DNA repair and recombination proteins [BR:gba03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     J421_5987
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID: AHG93522
UniProt: W0RSS2
LinkDB All DBs
Position
p2:complement(526129..528768)
Genome map
AA seq 879 aa AA seqDB search
MTADGNEQTPTSDHLSRYRAKRSADTTPEPMGSVSPVLGRLFVVHKHAARQLHFDLRLEM
DGVLRSWAVPKGPSYDMNDRRLAVKVEDHPIEYGDFEGIIPAGNYGAGGIIVWDRGEWVP
LEDWREGLEKGKLLFELRGHKLHGKWTLVKIKKSDRDWLFIKERDAWVRTPGDDFPETSV
LSGLTVEEVKAGKSPTGRVRAALMEAGAPATRVDPRAVEVMLAEPADEAFTRAGWLFEPK
LDGYRLLAAKTRGDVLLLTRNGNDYTNVFPEIARAVRAIPCHECIVDGEVVVLDPRGMPN
FALMQRRGQLTSPLDIRRMAVELPATYYAFDLLAFEEFDVRPLPLVRRKALLAELVPSLG
VLRSVDHHEREGERFLQHASAIGLEGMIAKRADAPYRGGRTDAWLKIKSARTGDFAIVGF
TAPNGGRRHFGALQLADMVGGRLVYAGRVGTGFDDAQLARLGAMLQPVIRSDAPCDGPVA
APGAEPAAAIPETGTTTWVDPVHVCEVRYAEWTPDGLLRHASFLRMRTDKHPRDCDRQRW
PAHEPEPVPMTVAVDVADAADAVEESEAAPVAPEPPRPVEKTFAFSNLSKRYWPAEGYTK
GDLVEYYRAIAPRMLPYLSDRPVVLTRFPDGIEGKSFYQKDAPEFTPPWVRTIPIWSEES
QREIRYFVCNDVETLLYLANMASIPLHIWASRVGSLEQTDWCVIDLDPKEAPFSDVVRTA
LVLREICESIGLPSYVKTTGKTGLHILVPLGRQCTYAQSRMLGELLARVVLARVRDIATI
TRHVTKRGDKVYLDYLQNRHGQTIVAPFSVRPLPGATVSMPLRWEEVNASLDPKAFTIRT
ALDRMDRLGVDPMLDVLAESPDLQLVLQRLAQVLAADAR
NT seq 2640 nt NT seq  +upstreamnt  +downstreamnt
atgaccgccgacggcaacgagcagacacccacgtccgatcatctcagtcggtaccgcgcc
aagcggtcggccgacacgacccccgagccgatggggagcgtgtcgccggtgctcggccgg
ctgttcgtcgtgcacaagcacgccgcgcgacagctgcacttcgatctgcggctcgagatg
gacggcgtgctccgctcgtgggccgtgccgaagggaccgtcgtacgacatgaacgaccgg
cggctcgccgtgaaggtcgaggaccacccgatcgagtacggcgacttcgaggggatcatc
cccgccggcaactacggcgccggcgggatcatcgtgtgggaccgcggcgagtgggtgccg
ctggaggattggcgggaggggctcgagaaggggaagctgctgttcgagctccgtggccac
aaactgcacggcaagtggactctggtaaagatcaagaagagcgatcgcgactggctcttc
atcaaggagcgcgacgcgtgggtccgcaccccgggcgacgacttccccgagacgtcggtg
ctgtcgggactgacggtcgaggaagtgaaagcaggcaagagtccgacggggcgcgtgcgc
gccgcgctcatggaggccggcgcgcccgcgacgcgcgtcgatccgcgtgccgtcgaggtg
atgctggccgagcccgcggacgaggcgttcacgcgcgccggctggctgttcgagccgaag
ctcgacggctatcgactgctcgccgcgaagacgcgcggcgacgtgctgctgctcacgcgt
aacggcaacgactacacgaacgtgtttcccgagatcgcgcgtgccgtgcgcgcgatcccg
tgccacgagtgcatcgtcgacggcgaggtcgtcgtgctcgacccgcgcggaatgccgaac
ttcgcgctcatgcagcggcgcggccagctcacgtcgccgctcgacatccggcgcatggcc
gtggagctgccggcgacgtactacgcgttcgacctgctcgcgttcgaggagttcgacgtc
cggccgctgccgctcgtgcggcgcaaggcgctgctcgccgagctggtgccctcgttaggc
gtgctgcgctcggtggaccaccacgagcgcgagggcgagcggttcctgcagcacgcctcg
gcgatcgggctcgaggggatgatcgcgaagcgggccgacgcgccgtaccgcggcgggcgc
accgacgcgtggctcaagatcaagtcggcgcgcaccggcgacttcgcgatcgtcggcttc
accgcgcctaacggcgggcggcggcacttcggcgcgctgcagctcgcggacatggtcggt
gggcggctcgtctacgcgggccgcgtgggcacgggcttcgacgacgcgcagctcgcgcga
ctcggcgcgatgctgcagcccgtcatccgcagcgacgcgccgtgcgacgggcccgtcgcc
gcgccgggcgcggagcccgctgccgcgatccccgagacggggacgacgacgtgggtggat
ccggtgcacgtgtgcgaggtgcgctacgccgagtggacgccggacggtctgctgcggcac
gcgtcgttcctgcgcatgcgcaccgacaagcacccacgcgactgcgatcggcagcggtgg
cccgcgcacgagcccgagccggttccgatgaccgtcgccgtcgatgtcgccgacgccgcg
gacgccgtcgaggaaagcgaggcggcccccgtcgcgccagagccgccgcggcccgtcgag
aagacgttcgcgttctccaacctgtccaagcgctactggccggcggagggatacacgaag
ggcgacctcgtggagtactaccgcgcgatcgcgccgcgcatgctgccgtacctcagcgat
cgtcccgtggtgctcacgcgcttccccgacggcatcgaggggaagtcgttctatcagaag
gatgcgccggagttcacgccgccgtgggtgcgcacgatcccgatctggagcgaggagtcg
cagcgcgagatccgctacttcgtgtgcaacgacgtggagacgctgctctacctcgcgaac
atggcgtccatcccgctgcacatctgggcgagccgcgtcgggtcgctggagcagacggac
tggtgcgtgatcgacctcgacccgaaggaggcgccgttctccgacgtcgtgcgcacggcg
ctcgtgctgcgcgagatctgcgagtcgatcgggctgccgagctacgtgaagacgaccggc
aagaccgggctgcacatcctcgtgccgctgggccgccagtgcacgtacgcgcagtcgcgc
atgctcggcgagctgctggcgcgcgtcgtgctcgcgcgcgtgcgcgacatcgcgacgatc
acgcggcacgtgacgaagcgcggcgacaaggtctacctcgactacttgcagaaccggcac
ggccagacgatcgtcgcaccgttcagcgtgcggccgctccccggcgcgacggtgtcgatg
ccgctgcgctgggaggaggtgaacgcgtcgctcgacccgaaggcgttcacgatccgcacg
gcgctcgaccgcatggaccgactcggcgttgacccgatgctcgacgtgctcgccgaatca
cccgacctgcagctcgtgctgcagcggctcgcgcaggtgctcgccgcggacgcccgttag

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