KEGG   Geobacter bemidjiensis: Gbem_0128Help
Entry
Gbem_0128         CDS       T00749                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D, ATP-dependent
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
gbm  Geobacter bemidjiensis
Pathway
gbm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gbm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Gbem_0128 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gbm03400]
    Gbem_0128 (ligD)
Enzymes [BR:gbm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Gbem_0128 (ligD)
DNA repair and recombination proteins [BR:gbm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Gbem_0128 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ACH37159
UniProt: B5E922
LinkDB All DBs
Position
complement(152612..155227)
Genome map
AA seq 871 aa AA seqDB search
MGLEEYQRKRNPGRTPEPPASEGKSERSLRFVVHKHAASHLHYDFRLELDGVLKSWAIPK
GPSLDPSVKRLAMMVEDHPYDYGDFEGVIPKGNYGAGEVIVWDTGSYEAPGAADPEQGVR
LLREGLKKGDLKFILVGRKLNGEYALVRIKGDKENTWLLIKKNDRFASTEDVTLQDRSVV
SDVTIEELKTGRKPQALPLAAAEAAEPVGPVRPAAPMPHRLTPMLANSAAEPFDDPDWLF
EIKLDGYRAIAEIEGGEVQLYSRNNLSFNKRFPAIVQSLASLPVTAVLDGEVVALDAKGR
SSFQLLQNSLRTGEKNIYYYAFDLLYLDGEDLRAEPLQARKERLRNLLPELPWVRFSDHI
REYGRQFFELARENNLEGILAKRADSRYFAGRRSGDWLKIKIRLQQEAVICGFTQPRGSR
KGLGSLVLGVYENGELVYIGLTGGGFDDVGLKEMYAALQPLIQPESPFRQQVKTSMPVTW
TKPVLVCEVEFAEWTDENVMRLPIFLGLREDKDPRSVQREIFPAEVQPPVHHAQTDQEED
VGEPAAGEKVPAEETVATAKPFVKKGGAKKGEVNLVIDGQRLTLTNLDKVFWPEEGYTKG
DVIDYYRKMARVILPYLMDRPESMYRTPHGIAEGGFYQKETADLIPPWITAREIYSKHVD
KNIKFLVCQDEATLIYMANLGCIEINPWLSRLQQLDYPDYLVIDLDPEDISFEKVIETAL
AVHEVLESAGAASFPKTSGATGIHIYVPLGARYDYDTAGVFAKLVATLAHHKVPGFTSLL
RSPRQRQKKVYLDFLQNKPGQTLAAPYSIRPRPGATVSAPLRWEEVKPGLDPRQFTINTI
GKRLEQVGDLFQGVLGPGIDMERCLERLQNG
NT seq 2616 nt NT seq  +upstreamnt  +downstreamnt
atgggactggaagagtatcagcgcaaaaggaatccggggaggacgccggagccgccggcc
agcgaggggaagtcggagagatctttacggttcgtggtgcataagcacgcggcctctcat
ctgcattacgactttaggctcgagctcgacggagttctgaaaagctgggccatccccaag
ggcccctcgctggatccctcggtaaaaaggctcgccatgatggtggaggaccacccctac
gactacggcgacttcgagggggtgattcccaaggggaattacggggcaggcgaggtgatc
gtctgggacaccgggagctatgaggccccgggggcggccgatccggaacagggcgtgagg
ctgctgcgcgaggggctgaaaaagggagacctgaaattcatcctcgtcggccggaaattg
aacggggaatatgccctagttcgcatcaagggggacaaggagaacacctggcttttgatc
aagaaaaacgaccggttcgcctcgaccgaggacgtgacgttgcaggaccgttcggtggtc
agtgacgtcaccatcgaggagctaaagacggggaggaagccacaggcgttgcccctagcc
gccgcagaggcggcggaaccagtcggacctgtcagacctgccgctccgatgccgcaccga
ctcactccgatgctggccaactccgcggccgagcccttcgacgatcccgactggctcttc
gagataaaactcgacggctaccgcgccatcgccgagatagagggcggcgaggtgcagctc
tactcgcgcaacaacctctccttcaacaagcgcttccccgccatcgtccagtcacttgct
tccctgccggtcacggcagtgctggacggtgaggtggtagccctcgacgccaaggggagg
tcttccttccagctcttgcagaacagcctgcgcaccggggagaagaacatctactactac
gccttcgacctcctctacctcgacggcgaggacctgcgcgccgaaccgctccaggcacgc
aaggagaggcttcgcaacctgctccccgaactcccctgggtccgcttcagcgaccatatc
agggagtacggcaggcagttcttcgagcttgcccgcgagaacaacctggagggaatcctc
gccaaaagggccgacagccggtattttgcgggaagaagaagcggcgactggctgaagatt
aagatacggctgcagcaggaggcggtgatctgcgggttcacccagccccgagggagcagg
aaaggattgggctctctcgtgctgggggtctacgaaaatggcgagctggtctacatcggg
cttaccggaggggggttcgacgatgtggggttgaaggagatgtacgctgcgctgcaaccg
ctgatccagccggagtcccctttccggcagcaggtgaagaccagcatgccggttacctgg
accaaaccagtgctggtctgcgaggtcgaattcgccgagtggaccgacgagaacgtcatg
cgcctgcccattttcctggggcttcgtgaggacaaggaccccaggtccgtgcagcgggag
atctttcccgcggaggtccagcccccggtgcaccatgcgcagacggatcaagaggaggat
gttggcgagcctgcggcaggggaaaaggtgcctgcagaggagacggttgccacagccaag
cctttcgtgaagaaggggggcgcgaagaaaggggaggtaaacctcgtcatcgacgggcag
cggctcaccctgaccaacctggacaaggtcttctggccggaggagggatataccaagggg
gacgtcatcgactactaccgcaagatggcacgggtgatactcccgtacctcatggaccgc
ccggagtcgatgtaccgtacgccgcacggcatcgccgaaggaggtttctaccagaaggag
acggccgacctgatccccccctggatcaccgcccgggagatctattccaaacacgtcgac
aagaacatcaagttcctcgtctgccaggacgaggcgacgctcatctacatggccaacctg
ggctgcatcgagatcaacccatggctgtcgcggctgcagcagctcgactaccccgattac
ctggtgatcgacctggaccccgaggacatctccttcgagaaggtgatcgagaccgcgctc
gccgtgcacgaagtcctggaaagcgcgggcgcggccagtttcccgaagacctccggcgcc
accggcatccacatctacgtcccgctgggagcacgctacgactacgacacggcaggggta
ttcgcgaagctggtggcgaccctcgcgcaccacaaggtccccggcttcaccagcctcttg
cgcagccccaggcagcgccagaaaaaggtgtacctcgacttcctgcagaacaagccgggc
cagaccctcgccgccccctacagcatccgcccccgccccggggcgaccgtttcggcgccg
cttcgctgggaggaagtgaagccgggtctcgacccgcgccagttcaccatcaacaccatc
gggaagcggctggagcaggtcggcgacctgttccaaggcgtcctcggtcccggtatcgac
atggagcgctgcctggagcggctgcaaaacgggtag

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