Citrifermentans bemidjiense: Gbem_3293
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Entry
Gbem_3293 CDS
T00749
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gbm
Citrifermentans bemidjiense
Pathway
gbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gbem_3293 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gbm03019
]
Gbem_3293 (rhlE-2)
Enzymes [BR:
gbm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Gbem_3293 (rhlE-2)
Messenger RNA biogenesis [BR:
gbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Gbem_3293 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Flavi_DEAD
Helicase_RecD
UTP25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACH40290
UniProt:
B5EAF1
LinkDB
All DBs
Position
complement(3785700..3787115)
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AA seq
471 aa
AA seq
DB search
MDFKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPML
HRLVQEERGHVRGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKLKEG
AEIVVACPGRLLDHISQGTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLM
FSATMPDDIRRLAHEILRNPVTVQVSRTAPAATVSHALYPVGQHLKTPLLFEMLKHTDTE
SVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATDIAA
RGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSEDDYTVRSIEKVLGT
KIERRRIEGFDYAVPAPQKDTEFARPPREPQRRRDGAKPGAGRPAAAGPAGAKPASAVGA
KGNAAASGRPAAHGSKDGSADGGHASGPAGKHRQHPGGNRPANHAARRSGR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtggatttcaaacagtttaatttgcaccccaaggtccaggcaggcatcgaggccatgggg
tacgtcaccccgacccccatccagttgcaggcgattccctcggtcatctccgggcaggac
gtactcggcctggcccagaccggcaccggcaagactgccgctttcggccttcccatgctg
caccgcctggtgcaggaagagcgcgggcatgtccgcggtctggtcctcgcccccacccgt
gagcttgcagagcagatcaacgatgccctgaacggcatggggaagcagacccgcctgaga
agcgtcacggtatatggcggggtcaacatcaacacccagatcaagaagctcaaagaaggt
gccgaaatcgtggtcgcctgcccggggcgccttttggaccacatctcccaggggaccatc
gacctctccagggtcgagatcctggtgctggacgaggcggaccagatgttcgacatgggc
tttctccccgacgtgaggaagatcttgagggcgctccccggcaagaggcagaacctcatg
ttctccgccaccatgcccgacgatatccgcaggctggctcatgagatcctgcgcaacccg
gtcacggtgcaggtgagccgcacggctcccgccgctaccgtgtcgcatgcgctctacccc
gtggggcagcacctgaaaaccccgcttctcttcgagatgcttaagcacaccgacaccgag
agcgtgctgatcttcaccaagaccaagcaccgcgccaagagggtaggggagcaactggag
aaggccggctacaaggcgacctcgctgcaggggaacctttcccagaacagaaggcaggcg
gcactcgacggcttcagggatggcaccttccagatcatggtcgccaccgacatcgccgcg
cgcggcatcgacgtctcgctcatctcccacgtcatcaactacgacatcccggataccccc
gaggcctacacccaccgcatcggccggaccggccgtgccgccaagaccggcgacgccttc
accatggtgacctcggaagacgactacacggtgcgcagcatcgagaaagtgttgggaacg
aagatcgagcgccgccgcatcgaggggttcgactacgcggtccccgctccgcaaaaggac
accgagttcgcccggccgccccgcgaacctcagcgccggagagacggagccaagcccggc
gccgggagacccgccgcagccggacccgccggggccaaaccggcttccgcagtgggcgcg
aaaggtaacgcagccgcttccggccgtcctgccgctcacggcagcaaagacggctcggca
gatggcggccatgcttccgggcctgctggaaagcaccggcagcaccccggcggcaaccgc
cccgcgaaccacgccgcccgccgcagcggcaggtag
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