Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_2239
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Entry
Gdia_2239 CDS
T00798
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Gdia_2239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gdj03400
]
Gdia_2239
Enzymes [BR:
gdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Gdia_2239
DNA repair and recombination proteins [BR:
gdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Gdia_2239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACI51994
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All DBs
Position
2482664..2485234
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AA seq
856 aa
AA seq
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MALDTYRSKRDFKATPEPEGAEAAEKPDTGAGHLFVIQKHAAHRLHYDLRLEMDGVLKSW
AVTRGPSLNPGDKRLAVQVEDHPLDYGTFEGTIPKGQYGGGTVMLWDKGTWTPLHDPVRG
LAKGHLDFELRGEKLHGRWNLVRMDGHREGTHENWLLIKAADSDARSKNDADILEERPES
VKTGRAMDDIAAGAPGKDRVGKAAAQKAVTKKAAIPKDAPQADAAATGAAPCAGAKPGPL
PSFVEPELATLVRAAPTGPQWLHEVKFDGYRLLARIEAGRVVLLTRTGLDWTARFGDQIS
AALASLPVRTALIDGELVVETAGGTSDFSALQADLSAGRTDRFIFYVFDLLHLDGYDLRD
ATLEARKGALHDLVPDDAARLRFSGHFDEAGGQVLRHACRLGLEGIVSKQRDVPYRSGRG
RDWVKSKCVARQEFVIGGYVPSTASRGAVGSLVLGVQENGRLVHVGRVGTGFTAATAADL
LRRLQPLDVPDSPFAAALTARERKGVRYVRPDCVAEVEFRAWTADGHLRHAAFLGLREDK
PAADIVREVEAPDPVSSGPSSKPVKPVSPEPAPARPARTLTHPDRSYWPDAGVTKQDLAD
YYAAIWPRMAPFITDRALALLRCPNGIAGPRFFQKNLWKGAGGHLVPLRDPEGDPGTPLI
GLRDRDGLIDLAQAAALEIHPWGASAQAWDQPDMIVMDLDPGDGVPWSMVIEAAREIRAR
LERSGLASFVKTTGGKGLHVVAPLKPGADWTAVKAFTRSMAQAMVSDSPQRYVATITKSR
RQGRILVDYLRNQRGATAVAPYSPRARPGAPVAMPLAWNELGPDIGPAHFTIGTIAARLA
VADPWAEIRDAARPLR
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggatacctatcgcagcaagcgcgatttcaaggcgacgcccgagcccgagggt
gccgaggcggcggaaaagccggataccggcgcgggccatctgttcgtcatccagaaacat
gcggcacaccgcctgcattacgacctgcggctggaaatggatggcgtgctgaagagctgg
gcggtgacgcgcggccccagcctgaacccgggcgacaagcgcctggccgtgcaggtcgag
gaccacccgctggattacggcacgttcgagggcacgatcccgaaggggcagtatggcggc
ggcacggtcatgctctgggacaagggcacgtggacgccgctgcacgatccggtccggggc
ctcgccaaggggcatctcgatttcgaactgcggggcgaaaagcttcacggacgctggaac
ctggtgcggatggacggacaccgcgagggaacgcatgagaactggctgctgatcaaggcc
gccgattccgatgcacggtcgaagaacgatgccgatatcctcgaagagcggccggaatcc
gtaaagaccggccgtgcgatggacgacatcgcggccggtgcgccagggaaggacagggtc
gggaaggcggcggcccaaaaagccgtgacgaagaaagccgcgataccgaaggacgcgccg
caggcggacgcggccgcgacaggcgccgcaccctgcgcgggggcgaagcccggcccgttg
ccatccttcgtcgagcccgaactggccaccctggtgcgcgcggcccccaccggcccgcaa
tggctgcacgaggtcaagttcgacggctaccgcctgctggcgcggatcgaagccggacgg
gtcgtgctgctgacccgcacgggcctggactggaccgcccggttcggcgaccagatcagt
gccgcgctggcgtccctgccggtgcggacggcgctgatcgacggcgaactggtggtggaa
accgcaggcgggacctcggatttttccgctctccaggccgatctcagcgccggccgcacc
gaccgcttcatcttctacgtcttcgatctgttgcatctggacggctacgacctgcgcgac
gcgacgctggaggcgcgcaagggcgcgctgcacgacctggtgccggacgatgcggcgcgg
ctgcgcttcagcggccatttcgacgaggccggggggcaggtgctgcgccatgcctgccgc
ctgggcctggagggaatcgtctccaagcagcgggacgtgccctaccggtcgggacggggc
cgggactgggtgaaatcgaaatgcgtggcgcggcaggaattcgtgatcggcggctacgtg
ccctcgaccgccagccggggggcggtcggctcgctggtccttggggtccaggaaaacggc
aggctggtccatgtcggccgggtcgggaccggcttcaccgccgcgacggcggcggacctg
ctccggcgcctgcaaccgcttgatgttcccgacagtcccttcgccgctgccctgacggcc
cgcgagcgaaagggggtgcgctatgtccgccccgattgcgtggcggaagtggaattccgc
gcctggaccgccgacggccatctgcgccacgcggcgttcctgggcctgcgcgaggacaag
ccggcggccgacatcgtccgcgaggtcgaagcgcccgaccccgtatcctccggcccttca
tccaaaccggtcaaaccggtttccccggaacccgcgcctgcccgcccggcccgcaccctg
acccatcccgaccggtcctactggccggatgccggcgtgaccaagcaggacctggccgat
tattacgccgcgatctggccgcgaatggcgcccttcatcaccgaccgcgcgctggcgctg
ttgcgctgccccaacggcatcgcggggccgcgcttcttccagaagaacttatggaagggc
gccggcggtcacctggtgccgttgcgggacccggaaggcgatcccggcacgccgctgatc
ggcctgcgcgaccgcgacgggctgatcgacctggcgcaggccgccgcgctggaaatccat
ccctggggcgcgtccgcccaggcgtgggaccagcccgacatgatcgtgatggacctcgat
cccggcgacggcgtgccctggtccatggtgatcgaggcggcgcgggaaatccgcgcgcgg
ctggaacggtccggcctcgcgtccttcgtcaagacgaccggcggcaaggggctgcatgtc
gtggcgccgctgaaacccggggccgactggacggcggtcaaggccttcacccggtccatg
gcccaggcgatggtgtcggacagcccgcagcgttacgtggccaccatcaccaaatccagg
cgccagggccgtatcctggtcgattacctgcgcaaccagcgcggcgcgaccgccgtcgcg
ccctattccccccgtgcccgccccggcgcgccggtcgcgatgccgctggcctggaacgaa
ctggggccggatatcggacccgcgcatttcaccatcgggacgatcgccgcccgactggcg
gtcgcggacccgtgggcggagatccgtgacgcggcccggccgctccgttaa
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