KEGG   Geobacter sp. M18: GM18_0111Help
Entry
GM18_0111         CDS       T01421                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
geb  Geobacter sp. M18
Pathway
geb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:geb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GM18_0111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:geb03400]
    GM18_0111
Enzymes [BR:geb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GM18_0111
DNA repair and recombination proteins [BR:geb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GM18_0111
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ADW11600
UniProt: E8WKB5
LinkDB All DBs
Position
complement(129051..131729)
Genome map
AA seq 892 aa AA seqDB search
MGLEEYQRKRDLTRTPEPAGKGGRSARTLRFVIHKHAASHLHYDFRLEIDGVLKSWAIPK
GPSLDPSVKRLSMMVEDHPYEYGDFEGVIPKGNYGAGEVIIWDAGTFHAAASEERELSLK
LLREGLQKGDLKFILHGEKLNGEFALVRIRSDKGNSWLLIKKHDRYAGTEDVTLKERSVV
SNATIEDVRAGRMPGRRVFAAQSGEARAGGPAPPPHPTSPLGGEEQSGTPSPGGGKRSEA
PMPRRVSPMLATSTAEPFDDPDWLFEIKLDGYRAIAEVSGREVALYSRNNLSFNKKFPSL
PGSLASLDVEAVFDGEVVALDENGRSYFQLLQNYRRTGKGNIAYFIFDLLYLNGEDLRNQ
PLLARKERLRTLLPDLPELRYSDHIMEYGREFFELARQNNLEGILAKRAASLYQTGRRSK
DWLKIKIRMQQEAVICGFTQPRRSRKGFGALVLGVYEDDRLVCIGFAGGGFDEAGLKEMY
ELLQPLVQPEPPFGTPVKSDMPITWVKPELVCEVEFSEWTDENVMRQPIFLGLREDKDPK
SVVRELVRSAATPPQPAAEPERRAQLPGATAKEPVAAGIPASRKGGSGKKGRDEVLILDG
HRLELTNLDKVFWPDEGYTKGDVIAYYRIMAHAMLPHLVDRPESLHRTPHGITEGGFFQK
EAGELPPSWITTREIYSKHVDKHIKFFVCQDEATLVYMANLGCIEINPWLSRLQHLDYPD
YFVIDLDPEDIPFAKVIETALAVREVLDRAGAVSFPKTSGATGMHIYVPLGAKYDYDTAG
GFAKVIATLAHHKVPDFTSLLRSPRLRQKKVYLDFLQNKPGQTLAAPYSIRPRPGATVSA
PLKWEEVKPGLDPGRFTIATMPGRLEHVGDLFSGVLGPGIDLERCIENLERG
NT seq 2679 nt NT seq  +upstreamnt  +downstreamnt
atggggctggaagagtatcagcgcaaaagggatctgaccaggacccctgagccggccggc
aaaggggggaggagcgccaggaccctgcgcttcgtgatccacaaacacgcggcctcccac
ctgcattacgacttccgcctggagattgacggggtgctgaagagctgggcgatccccaag
ggcccctcgctcgatccctccgtgaagcggctctccatgatggttgaggaccacccctac
gagtacggcgatttcgagggtgtcataccgaaggggaactacggcgccggagaggtgatc
atctgggacgcgggcaccttccacgccgcggcctccgaggagcgggagctaagcctcaag
ctcttgcgcgaagggctgcagaagggggacctgaagtttatcctgcacggcgagaagctg
aacggggagttcgccctggtccgtatcaggagtgacaaggggaactcctggctcctgatc
aagaagcacgaccggtatgccggcaccgaggacgtgacgcttaaggagcgctccgtggtg
agtaacgccaccatcgaggacgtacgggcgggaagaatgccgggacgccgggttttcgcc
gctcagagcggggaggcccgggcgggcgggccggcgcctccaccccacccgacctccccc
ctcgggggggaggaacaatccggaaccccctcccctggagggggaaaaaggtccgaggcg
cccatgccgcgccgagtcagcccgatgctggcgacctccaccgctgaaccgttcgacgac
ccggactggctcttcgagatcaagctcgacgggtaccgcgccatagccgaggtctccggg
agagaggtcgcgctttattcccgcaacaacctctccttcaacaagaagttcccgtcactg
ccaggttcgctggcatcgctcgatgtcgaggccgttttcgacggggaggtggtggcgctg
gacgaaaacggcaggtcctatttccagctgctgcagaactaccggcgcaccggtaaaggc
aacatcgcctacttcatcttcgacctcctctacttaaacggcgaggacctgcgcaaccag
ccgcttctggcgcgcaaggagcggctgcgcaccctgctcccggacctgccggagctccgc
tacagcgaccacatcatggagtacggcagggagttcttcgaactggcgcgccagaacaac
ctggaagggatcctggccaagcgtgcggcaagcctgtaccagaccggcaggaggagcaag
gactggctcaagatcaagatcaggatgcagcaggaggcggtgatctgcggcttcacccag
ccccgccgcagccgcaaggggttcggagcgctggtgctcggggtgtacgaggacgacagg
ctggtctgcatcggttttgccggcggcggtttcgacgaggccgggctcaaggagatgtac
gagctgctgcagcccctggtgcagcccgagccgccgttcggcacgccggtaaagtccgac
atgccgatcacctgggtgaaaccggaactggtctgcgaggtggagttctccgagtggacc
gacgagaacgtgatgcgccaaccgatctttctcgggcttcgagaggacaaggacccgaaa
agcgtggtgcgggagctggtcaggtccgcggcgaccccgccgcaaccggcagcggagccg
gaaaggagagcgcaactgccgggcgctacggcaaaagagccggtggcggcgggcattccg
gcgagtcgcaagggtgggagcggtaagaaggggcgggacgaggtgctgatcctggacggg
caccggctggagctgaccaacctggacaaggtgttctggccggatgagggatacaccaag
ggggacgtgatcgcctactaccggatcatggcgcacgccatgctgccgcacctcgtggac
cggcctgagtcgctgcaccggacgccgcacgggatcacggaaggggggttctttcagaag
gaggccggcgaacttcccccctcctggatcaccacccgggagatctactcgaagcacgtg
gacaagcacatcaaattcttcgtctgccaggacgaggcgaccctggtctacatggcgaac
ctggggtgcatcgagatcaacccctggctctcccgcctgcagcatctcgactatccggac
tacttcgtcatcgacctggaccccgaggacatccccttcgccaaggtgatcgagacggca
ctcgcggtgcgcgaggtgctggaccgggccggcgccgtcagcttccccaagacctccggc
gccaccgggatgcacatctacgtgccgctgggggccaagtacgactacgacaccgccggt
gggttcgccaaggtgatagccacgcttgcgcaccacaaggtccccgatttcaccagcctt
ttgcgcagccccaggttgcggcagaagaaggtctacctcgacttcctgcagaacaagccc
ggacagacgctggccgccccctacagcatccgcccccggccgggcgccaccgtctcggct
ccgctgaaatgggaggaggtgaaaccggggctggatcccggccggttcaccatcgccacc
atgccgggacggctggagcatgtgggtgacctcttcagcggtgtcctcggaccggggatc
gacctcgagcgatgcatcgaaaatctggagcgggggtag

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