Geobacter sp. M18: GM18_0421
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Entry
GM18_0421 CDS
T01421
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
geb
Geobacter sp. M18
Pathway
geb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
geb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GM18_0421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
geb03400
]
GM18_0421
Enzymes [BR:
geb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GM18_0421
DNA repair and recombination proteins [BR:
geb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GM18_0421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
ResIII
AAA_11
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADW11904
UniProt:
E8WPC5
LinkDB
All DBs
Position
complement(526925..530275)
Genome browser
AA seq
1116 aa
AA seq
DB search
MKRFDLLHTPLSGRNLIEASAGTGKTFTIAGVYLRLVLEEELDVSRILVVTFTEAATKEL
KERVRKKLKEAESGFEAGASEDFLIAGLLQSSSDHHKARRLLASAVRSFDEAAIFTIHGF
CQRMLQDNPFESGSLCDTELVTDQGKILTEIAQDYWRINCYGAPVERIAAADAARVSPES
LLKLAQRVCSDPNATVIPDPPAETSEVEDWLLALKRGFCDYLRAELPKRKRLRNVRSFDD
LLGDLRAALTRTGSTLPRLIRERYQAALIDEFQDTDPIQFAIFDAIYPVGCEIPFFLIGD
PKQAIYSFRGADIFAYMGAAEATEERHTLLQNFRSEPGLIEAVNTLFASRDLPFLYPQIG
FNKVEAAPKEASRLTEAGERKAPLKFWLAPRKDAGKPINKGDAWDQLPETVASEIARLLR
GGAAGKLAIEELKKEGEDERWAQRAVQPRDIAVLVRANRQAKLMQRALTRRGIPSVLCSA
GNLFESDEAAELLRLLSAVAQPGHESLLRGALATDLVGVSGAELALLMDDEKGWEEILEE
FRGYHDTWNTGSCMSMALQFMEKRKVRERLLAEPMGERRLTNLLHAIETIHQAQVKERLG
MEGVIAWLACRITEEPKKEEYEIRLETDEAAVQLVTIHKSKGLEYPIVFLPFCWAEFNGK
DEGALFHDEDRKVVLDIGSQELEMNKALAAQEALAESLRLLYVALTRGKHRTYLIWGAFK
DAGDSALHYLLHPDQTAAKGQVTLKDCEIRERLTSLAQSSSGAIELLDMPPADLEQYRAR
DERTPELTPVLFTGTITRDWRVASFTSLSSRQHHTAELPDRDEGSPVEEHSARDVEPSGI
FAFPKGAKAGIFLHKIFEELDFTQAAARLEPLVDDQLDKHGFSADWSMAVREMVRNVLQA
PLGSEGITLTQVGLERRLTELEFFFPLSLVTSDRLKEAAARFMARHDAADGTNFPVDVAD
LFSRLSFSPVKGMLLGFIDLVFEQGGRYYIVDWKSNHLGNAPQDYGQTALKRAMEENFYP
LQYLLYTVALDNYLRLRIPDYDYDRHFGGVFYLFLRGVDGTGNGVFTDRPPKEFIAELAA
VLLPPPTLPLRSPEGPEGAGKRPKRSADQQLSLDLF
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtttcgacctgctacataccccgctttccgggcgcaacctgatcgaggcgagt
gccggcaccggcaagaccttcaccatcgccggcgtctacctgcgcctggtgctcgaggaa
gaactcgacgtgtcgcgcatcctggtggtgaccttcaccgaggccgccaccaaggagctg
aaggagcgcgtcaggaagaagctcaaggaagcggagagcggctttgaggcgggtgccagc
gaggacttcctgatcgccgggctgctacaaagcagctccgaccaccacaaggcccgccgc
ctcctggcgagcgcggtcaggagcttcgacgaggccgccatcttcaccatccacggcttt
tgccagcggatgctgcaggacaacccgttcgagagcgggtcgctctgcgacaccgaactg
gtgaccgaccaggggaagatcctcacggagatcgcccaggattactggcgcatcaactgc
tacggcgcacccgtagagaggatcgctgcggccgatgcggccagggtttctcctgagtcg
ctgctcaagctggcgcaaagggtctgcagcgaccccaatgccacggtcatccccgacccg
ccggccgagaccagcgaggttgaagattggctcctggcgctgaagcgcggcttctgcgat
tacctgcgcgccgagctgccgaagcgcaagcggctgaggaacgtgcgctcgttcgacgac
cttctgggtgacctgcgcgccgcgctgacccgcaccggctcgaccttgccgcggctgatc
cgggagcgttaccaggcggccctgatcgacgagttccaggacaccgacccgatccagttc
gccatcttcgacgccatctacccggtggggtgcgagatacccttcttcctgatcggggac
cccaagcaggccatctacagcttccggggcgccgacatcttcgcctacatgggggctgcc
gaagcgaccgaagagcgccacaccctgctgcagaacttccgttccgagccgggactgatc
gaggcggtgaacaccctgttcgcctcacgcgacctcccgttcctctacccgcagatcggc
ttcaacaaggtggaggcggcgccgaaagaggctagcaggctcaccgaggcgggagagagg
aaggcgccgctcaagttctggctcgccccgcgcaaggacgccggcaaaccgatcaacaag
ggggatgcctgggaccagctcccggaaacggtggcgtcggaaatcgcgcggcttttgcgc
ggcggcgcggcgggaaagctggccatcgaggagctgaaaaaggagggcgaggacgagcgg
tgggcgcagcgtgcggtccagccgcgggacatcgcggtgctggtgcgcgccaaccggcag
gcgaagctcatgcagcgggcgctgacccgcaggggtatcccgagcgttctctgcagcgcg
gggaacctcttcgaatcggacgaggcggcggaactcctgaggctcctctcggcggtggct
cagccggggcacgagtcgctgctgcgcggcgcactggccaccgacctcgtcggggtgagc
ggtgccgaactcgcgctgctcatggacgacgaaaagggctgggaagaaatcctggaggaa
ttcaggggctaccacgacacctggaataccggcagctgcatgtccatggcgctgcagttc
atggaaaagcgcaaggtgcgcgagaggctcctcgcggagccgatgggggagcggcggctt
accaacctcctgcacgccatcgagaccatccaccaggcgcaggtcaaggagcgtctgggg
atggaaggggtcatcgcctggctcgcctgccgcatcaccgaggagcccaagaaggaagag
tacgagatccgcctggagacggacgaggccgcggtgcagttggtcaccatccacaagagc
aaggggctcgaatatcccatcgtgttcctccccttctgctgggccgagttcaacggcaag
gacgaaggcgccctgttccacgacgaggaccgcaaggtggtgctcgacatcggttcgcag
gagttggagatgaacaaggcgctcgccgcgcaggaagccctcgccgagagcctgcggctt
ctctacgtcgccctcacccgcggcaagcaccgcacctatctcatctggggcgccttcaag
gacgccggtgacagcgcgctccattacctgctgcacccggaccagacggcggcgaagggc
caggtgacgctgaaagactgcgagatccgcgagaggctgacgagcttggcccagtcgtcc
tccggcgccatcgagctcttggacatgccgccagccgacctggagcagtaccgggcgcgg
gatgagagaacgccggaattgacgccggttctcttcaccgggaccatcacccgggattgg
cgcgtggcgagctttacctcgctctcgagccgtcagcaccacaccgccgaacttcccgac
cgtgacgaggggagtccggtcgaggaacattcggccagggatgtcgagccgagcgggatc
ttcgccttccccaagggcgccaaggccggtatcttcctgcacaagatcttcgaggagctc
gatttcacgcaggccgccgcgcggctggagccactggtggacgaccagctggacaagcac
ggcttctccgccgactggagcatggcggtgcgcgaaatggtgcggaacgtcctgcaggca
ccgctgggaagcgaggggatcacgctgacgcaggtgggacttgagcggcgcctgacggag
ttggagttcttctttccgctctcgctggtgacctcggaccgcctgaaggaagcggctgcg
cgcttcatggccaggcatgacgccgccgacggcaccaacttcccggtagacgtggcggat
cttttcagccgcctgtcgttctcgccggttaaggggatgctgctcggcttcatcgacctt
gtgttcgagcagggggggcgctactacatcgtggactggaagtccaatcacctgggcaac
gccccgcaggactacggacagactgcgctgaaaagggcgatggaagagaacttctacccg
ctgcagtacctcctctacactgtggcgctcgacaactacctgaggctgcgcattcccgat
tacgactacgaccggcatttcggcggcgtcttctacctcttcctgcgcggcgtcgacggc
accggaaacggggtcttcaccgaccggcctcccaaggagttcatagccgaactcgccgcg
gtgctgctccctccacccaccttgcccctgcgctcccccgaagggccggagggagcgggg
aagaggcccaagaggtcggcggaccagcagctcagcttggatttgttttaa
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