KEGG   Gemmobacter sp. HYN0069: HYN69_13965Help
Entry
HYN69_13965       CDS       T05407                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
geh  Gemmobacter sp. HYN0069
Pathway
geh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:geh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HYN69_13965 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:geh03400]
    HYN69_13965 (ligD)
Enzymes [BR:geh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HYN69_13965 (ligD)
DNA repair and recombination proteins [BR:geh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HYN69_13965 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AWB49457
UniProt: A0A2S0UNT2
LinkDB All DBs
Position
complement(2899532..2902024)
Genome map
AA seq 830 aa AA seqDB search
MALETYNAKRDFTKTPEPAGQAAPQSGNAFVIQKHDATRLHYDLRLEWQGVMKSWAVTRG
PSLNPQDKRLAVEVEDHPLDYNSFEGTIPQGEYGGGTVIVWDRGTWSPAFDAAKGFTKGH
LEFDLAGEKLHGRWHLVRIKGKPKEKRTNWLLIKGDDTHATPDRDILTDRPESVQTSRSI
QDVAAGKPARKRKAAKPKAAKPKDTKPAPQPADLTDAPKAKLPVFLPPALATLQTTPPKG
PNWTHEIKFDGYRLQARIDNGTVQLLTRSGHDWTARFGPAITNALQSLPVNTAIFDGEVV
VEAATGASDFSALQADLSAERSDRFLLYLFDLMHLDGHDTTRLPQYRRFELLKATVAETD
PLRLSHPFNDAGAMVLTHACRLSLEGILSKKCDEPYRSGRTKAWIKSKCSARQEFVIGGF
TPSSTDPRAIGALLLGVFDGHDFRNVGRVGTGFTHAVARDLYGKLEAIRQDTSPFTANPP
PPDKTARFTRPELVAEVEFRAWTGAGQLRHASFRGLREDKPASAVTREIPKTGSAKADAK
EDPPARRRIRLTHPDRIYWPDAGVTKEGLADYYAEVWPNIAPFVVGRPLALVRCPTGIDG
QHFFQKHLWRGAGKNIANIPDPSDPKAEPFLGINDLDGLMELAQAGVLEIHPWGAATADL
YHPDQITMDLDPGEGVGWPALVTAAHEVRERLQAKGLTAFVKTSGGKGLHVVAPLKPKAD
WKAVKAFTKAMADSMAADSPDLYVSTIAKAKRRNRILIDYLRNQWNATAVAAFSTRARAG
APVSAPLTWDELPDISAANTFTTTTLPARLATLTADPWQDFRHHATPLRP
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atggcgctcgaaacctacaacgccaagcgggattttaccaaaactcccgaaccggcaggg
caggcggccccgcagtcgggcaacgccttcgtcatccagaaacacgatgccacccgcctg
cattacgacctccgcctcgaatggcagggcgtgatgaaaagctgggccgtcacccgtggc
cccagcctgaacccccaagacaagcgcctcgcggtggaggtcgaggatcacccgctcgac
tacaacagcttcgaaggcaccattccgcagggcgaatacggcggcggcaccgtcatcgtc
tgggatcgcggcacatggtcccccgccttcgacgcggccaagggcttcaccaaaggccat
ctcgaattcgacctcgcaggtgaaaaactccatggccgctggcacctcgtccgcatcaag
ggcaaaccaaaggaaaagcgcaccaactggcttctgatcaagggcgacgacacccacgcc
acgcccgaccgcgacatcctgaccgaccgccccgaaagcgtgcaaaccagccgcagcatc
caagacgtcgccgcaggcaaacccgcccgcaaacgcaaagccgcaaaaccgaaggccgcg
aaaccaaaggacacgaaacccgccccgcagccagccgacctcaccgacgcccccaaggcc
aaactccccgttttccttccccccgcgctggccaccctgcaaaccaccccgcccaaaggc
ccgaactggacgcatgaaatcaaattcgacggctaccgcctgcaagcccgcatcgacaac
ggaaccgtccaactcctcacccgctcgggccacgactggaccgcccgcttcggccccgcc
ataacgaacgccctgcaatccctgccggtcaataccgcgatcttcgacggcgaagtggtg
gtcgaagccgccaccggcgcctccgacttttccgccctgcaagccgacctctcggcagaa
cgcagcgaccgcttcctcctctacctcttcgacctgatgcacctcgacggccacgacacc
accagactgccgcaataccgccgcttcgaactcctcaaggccacggtcgccgaaacagac
cccctccgcctctcgcacccgttcaacgatgcgggcgcaatggtgctgacccacgcctgc
cgcctgtcgctcgaaggtatcctgtccaagaaatgcgacgaaccctaccgctcgggccgc
accaaggcgtggatcaaatccaaatgctcggcgcggcaggaattcgtcatcggcggcttc
accccgtcctcgaccgacccccgcgccataggcgcgctgctcctcggcgtcttcgacggg
catgatttccgcaacgtgggccgcgtcggcaccggcttcacccatgccgtcgcgcgcgac
ctctacggtaaactcgaagcgatccggcaggacacctcgcccttcaccgccaacccgccc
ccgcccgacaaaaccgcccgcttcaccaggcccgaactggtagccgaggtcgaattccgc
gcatggaccggcgcaggccaactccgccacgccagctttcgcggcttgcgcgaagacaaa
cccgccagcgccgtcacccgcgaaatccccaaaaccggcagcgccaaggccgacgccaag
gaagacccccccgcccgccgccgcatccgtctgacccaccccgaccgcatctactggccc
gatgccggcgtcacgaaagagggcctcgccgattactacgccgaagtctggcccaacatc
gcccccttcgtcgtgggccgcccgcttgccctcgtccgctgccccaccggcatcgacggc
cagcacttcttccagaaacacctctggcgcggcgcgggcaagaacatcgccaacatcccc
gacccctccgatcccaaagccgaacccttcctcggcatcaacgacctcgacgggctgatg
gaactggcacaggcaggcgtgctggaaatccacccatggggcgccgccaccgccgacctc
taccaccccgaccagatcaccatggacctcgaccccggcgagggcgtgggctggcccgcc
ctcgtcaccgcagcgcatgaagtgcgtgaacgcctgcaagccaaaggcctgaccgccttc
gtcaagacctcgggcggcaagggcctgcacgtcgtagcccccctgaagcccaaggcagac
tggaaagccgtcaaggccttcaccaaggcgatggccgacagcatggccgccgacagcccc
gacctttacgtctcgaccatcgccaaggccaaacgccggaaccgcatcctgatcgactac
ctccgcaaccagtggaacgcgaccgccgtcgccgccttctcgacccgcgcgcgcgcaggt
gccccggtctcggcaccgctgacatgggatgaactgcccgacatttccgccgcaaacact
ttcaccacaacgaccctgcccgcccgcctcgccacccttaccgcagacccgtggcaagac
ttccgccaccatgctaccccgctgcgcccctga

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