Geitlerinema sp. PCC 7407: GEI7407_2840
Help
Entry
GEI7407_2840 CDS
T02366
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gei
Geitlerinema sp. PCC 7407
Pathway
gei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GEI7407_2840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gei03019
]
GEI7407_2840
03009 Ribosome biogenesis [BR:
gei03009
]
GEI7407_2840
Enzymes [BR:
gei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GEI7407_2840
Messenger RNA biogenesis [BR:
gei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GEI7407_2840
Ribosome biogenesis [BR:
gei03009
]
Prokaryotic type
rRNA processing factors
GEI7407_2840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
AFY67311
UniProt:
K9SBK3
LinkDB
All DBs
Position
complement(3488367..3490445)
Genome browser
AA seq
692 aa
AA seq
DB search
MPKQIVIAEQHRVAAVFSEDQIQELIVAKGTHQISDIYLGVVENVLPGIDAAFVNIGDAE
RNGFIHVSDLGPLRLKRSAGAITELLTPQQKVLVQVMKEPTGNKGPRLTGNITMPGRYLV
LMPFGRGVNLSRRIRNENERNRLRALAILVKPAGMGLLVRTEAEGMAEEAIIEDLEFLQR
QWETVQQEASSTRAPALLNRDDDFIQRVLRDVYSADVNRIVVDSSTGVKRVKQHLTNWGG
GKSPQGVLIDHHRDRTPLLEYFRVNAAIREALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNCEAATEIARQLRLRNVAGVIIVDFIDMDSRRDQLQVLEHFNKAL
KADKARPQIAQLSELGLVELTRKRQGQNIYELFGRRCPTCDGLGHLVHLIGDADTKAESL
GDRSSSESRFPQRSDSYGSRTVNRKSIRPVIAPEVVDEPDLSEDEDFLAEMPETEAQEYE
QPPEQPSSNGSRRRRRRRPEGGTDRREEAPKGVSDRASNPVSEPDEEPGDQEAATPRPER
AERTLERSDRSERPERSDRPERSRGRRGSAEPSAPPEQVTVKMTAEEQDVYALMGISPLI
LAPQEVKNPKTAVVSVVLPGEEGTTAEPVTLLSFEAEEPEAESSESPAEEPEVVAVVSSD
RPVKAARSSAPENRRRRRRRSSAAESGNESDS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaacaaattgtgattgctgagcagcatcgtgttgctgctgtgttttcagaagat
cagattcaagagctgattgttgccaagggcacccaccagattagtgatatctaccttggg
gtggtcgaaaatgttctgcctggtattgatgcggccttcgtcaatattggggatgctgag
cgcaatggctttatccatgtgagcgatctgggaccgctgcgcctgaagcggtctgcggga
gcaatcacagagctgctgacgccccagcaaaaagtgctggtccaggtcatgaaggagccg
acgggcaataaggggcctcgcctgacaggcaacattacgatgcccgggcgctatctggtc
ctgatgccttttggccgaggcgttaacctgtcccgccgcattcgcaatgaaaatgagcgc
aatcgcctgcgagctctggcgattttggtcaagcctgcgggaatgggcttgctggtgcgc
accgaggcggaggggatggctgaggaagccatcattgaggatctagagtttttgcagcgt
cagtgggagacggtgcagcaggaggcgagctcgactcgggctccggcgctgctgaaccga
gatgatgactttattcagcgggttctgcgcgacgtctacagtgcggatgtcaatcgcatt
gtggtggactctagtacgggcgtgaagcgggttaagcagcatctgacgaactggggtggg
ggtaagtctccccagggggtgctgatcgaccatcatcgcgatcgcacgccgctgctggag
tacttccgggtgaatgctgcgattcgagaggctctcaagccccgggtagacctgccatcg
gggggctacattatcattgagccgaccgaggcgctgacggttattgacgttaactcgggc
tcctttacgcgctcggcgacggcccgagaaacggtcttgtggacgaactgcgaggcggcg
acggagatcgctcgtcaactgcggctgcgcaacgtggctggcgtgattattgtcgacttt
atcgacatggactcccgccgcgatcagcttcaggtgctggagcattttaataaggcgctg
aaggccgataaggcccgcccccaaatcgcccagctgtcggagctgggcttggttgagctg
acgcggaaacgccaaggccagaatatctatgagctgtttgggcggcgctgcccgacttgc
gacggcctaggtcacctggtgcacttgatcggagatgccgataccaaggctgagagcctg
ggcgatcgctccagcagcgaatctcgttttccccagcgctctgattcctacggcagccgg
acggtcaatcgcaagagtatccggcctgtgattgcgccggaagtggttgatgagccggat
ctgtctgaggatgaagatttcttggcggagatgccagaaactgaggcgcaggagtatgag
cagcctccagagcagccgagctccaatggtagccgtcgccgtcgccgtcgccgcccggaa
gggggcactgacaggcgagaagaagctcccaaaggagtgagcgatcgcgcctcgaatcct
gtgagcgaacctgacgaggagcctggggatcaggaggctgctacgcctcggccggagcgc
gctgagcggacgctagagcgaagcgatcgcagtgagcgccccgaacggagcgatcgccca
gagcgcagccgaggccgccgcggcagtgccgaaccctcagccccaccagagcaagtcact
gtcaaaatgactgccgaagagcaagacgtttatgctctgatgggaatttctccgttgatt
ttggcgcctcaagaagtcaaaaaccccaagacagcggttgtctctgttgtgctgcctggt
gaagaaggcacaacagccgaaccggtgacgctgttgtccttcgaggcggaggagcccgaa
gcagaatcgtcagaatcacccgctgaagagcccgaagtggttgcggttgttagcagcgat
cgccccgtgaaggcagcccgcagcagcgcccccgaaaatcgccgccgtcgccgccgtcgc
tcttcagcggctgagtcaggcaacgaaagcgacagctaa
DBGET
integrated database retrieval system
