KEGG   Geobacter daltonii FRC-32: Geob_0336Help
Entry
Geob_0336         CDS       T00846                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D, ATP-dependent
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
geo  Geobacter daltonii FRC-32
Pathway
geo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:geo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Geob_0336 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:geo03400]
    Geob_0336 (ligD)
Enzymes [BR:geo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Geob_0336 (ligD)
DNA repair and recombination proteins [BR:geo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Geob_0336 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ACM18707
UniProt: B9LYX5
LinkDB All DBs
Position
complement(396258..398747)
Genome map
AA seq 829 aa AA seqDB search
MTLDDYRKKRDFDRTPEPQGRAGPSEPALRFVVQKHAASHLHYDLRLELDGVLKSWAVPK
GPSLDPAVKRLAMMVEDHPFDYRNFEGIIPAGNYGAGAVIIWDEGTCHAYGTEERSESER
ILRQGLAKGDLKFILHGHKLKGRFALVKIRSGKGNSWLLVKKDDEHATAADITRHDRSVV
SGRRLDELGPEGEEPVMADMPGEAAPMPHNVKPMLATLVKDAFDHPDWVFEIKLDGYRTI
AEISAGSVLLYSRNLLPFNNRFPTIAAALAGLGREAILDGEVTAMDENGRSDFQLLQNHD
RTGEGSILYFIFDLLYLDGRDLRNLPLLTRKTLLQEILPDLPQVRYCEHIGETGIAFFQA
AQDNGLEGIVAKLADSRYETGKRSSAWLKVKATLRQEAIICGFTEPRGSRKKFGTLVLGA
YDKGELVYIGTSGGGFDEASLNELHDMLLPLVQGDSPFKTRAATRMPAQWVKPVLVCEVS
FSEWTSDGVMRQPVFLGLRQDKDPVTIIRETFPGPMAAPPPSAEKAGLAEKELTIGSRRL
KLTNLDKVFWPAEGYTKRDVIDYYRTISPYLLPHLRDRPESLYRTPNGIEEAGFFQKDVR
DMVADWPLTEAIYSESQHKTITFLICQDEESLIYMANLGCIEINPWLSRLGSLDNPDYLV
IDLDPEEIGFEKVVETALAVKEVLDRAGAVGFPKTSGATGMHIYVPLGARYDYETAGRFA
HLIATLANHLVPDFTSLERSPAKRQGKVYLDFLQNKRGQTLAAPYSIRPRTGATVSTPLY
WSEVAPGLEPRDFTIRTVPRRIEKTGDIFVRVLGPGIHMERCIETLERL
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atgaccttggacgactaccgaaagaagcgcgatttcgatcgtaccccggagcctcaaggg
agagcaggcccatcggagccggccctccgctttgtcgtgcaaaaacacgccgcgtcccac
ctgcactatgaccttcgcctggaactggacggggtgctgaagagctgggcggtgcccaaa
ggaccgtccctcgacccggcggtgaaaaggctggccatgatggtagaggaccatcccttc
gactacaggaatttcgaggggatcattccggcaggcaactacggtgccggcgccgtaatc
atctgggatgaggggacctgccacgcctatgggacggaggagcgtagcgaaagcgaacga
atcttgcgccaggggctggcaaagggagatctgaagttcattctccacggccacaagctc
aagggcagatttgccctggtcaagatccgaagtggaaagggcaattcctggctgctggtt
aaaaaggacgatgaacatgccacggcggcagatatcacacggcatgaccggtcggtggtc
tcggggcgaaggctggatgaactggggccggaaggggaagagccagtcatggccgatatg
cccggcgaagccgcacccatgccccacaacgtcaagcccatgctcgccacgctggtgaag
gatgctttcgaccaccccgactgggtcttcgagatcaagctggatggttaccgcaccatc
gccgaaatctctgccgggtcggtgctcctctattcccgcaatctgctccctttcaacaac
aggtttcccaccattgccgccgcccttgccggattaggtagagaggccatccttgatgga
gaagtgacggccatggatgaaaacggcaggtccgatttccagctgctgcagaaccatgac
cgcaccggggaaggatcgatcctttacttcatcttcgatctcctctaccttgacggccgc
gatttgcgcaacctgccgctccttacccgaaagaccctcctgcaggaaatacttcccgac
ctcccccaggtgaggtattgcgaacatatcggtgaaaccggcatcgccttctttcaggcc
gcgcaggataacggcctggagggaatcgtcgccaaactggcagatagtcgctacgaaacg
gggaaaagaagcagtgcatggttaaaggtcaaggctacgctccggcaggaggccatcatc
tgcggctttacggagccaaggggaagccggaaaaaattcggcaccctggtgctgggtgcc
tacgacaagggagaactggtatacatcggcaccagtggcggcggctttgacgaggcgagt
cttaatgaactccatgacatgctgctgccgttggttcagggggactctccattcaaaacc
agggccgcgacaaggatgccggcccaatgggtgaagccggtactggtctgcgaagtctcc
ttttccgaatggaccagcgatggcgtcatgcggcaacctgtctttctcggcctgcgtcag
gacaaggacccggtgactataatccgggaaacatttcccggtcccatggcggcgccacct
ccgtccgcagaaaaagccggtctggcggaaaaagaactgaccatcggcagcaggcggctt
aagctgaccaacctggacaaggtcttttggcctgcagaaggctacactaaaagggacgtc
attgactattaccgcacgatttcaccctacctgctcccccatctgcgtgaccgccccgag
tccctctaccgcacccccaacggcatcgaggaagcagggtttttccagaaggacgtcagg
gacatggtagcggactggccgttgaccgaggccatatactccgagtcacagcacaaaacc
atcaccttcctcatctgtcaggatgaagaaagccttatctacatggccaatctggggtgt
atcgagatcaatccctggctctcccggctggggagcctggataacccggactacctggta
attgacctggaccctgaggaaatcggcttcgagaaagtagtggaaacggccctggcggta
aaagaggttctggaccgggccggggccgtgggctttcccaagacctccggcgccaccggc
atgcatatctatgttcccctcggagccaggtacgactatgaaacagcagggcggttcgcc
cacctcatcgccacccttgccaaccatctggtgccggatttcaccagcctggaaaggagt
ccggccaagagacagggaaaggtctatcttgattttctgcagaacaagcggggccagacc
cttgccgctccttacagcatccgccccagaacgggagcaacagtttccacccccctttac
tggagcgaggtggcgccggggctggaaccgcgggattttaccatcagaaccgtgccgcgg
cgcattgaaaaaacgggcgatatcttcgtccgtgtgctcggccccggcatccatatggaa
cgctgcattgaaacactggagcgtttgtaa

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