Geomonas oryzisoli: KP004_01640
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Entry
KP004_01640 CDS
T07282
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
ger
Geomonas oryzisoli
Pathway
ger00300
Lysine biosynthesis
ger00550
Peptidoglycan biosynthesis
ger01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ger00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
KP004_01640
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
KP004_01640
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ger01011
]
KP004_01640
Enzymes [BR:
ger01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
KP004_01640
Peptidoglycan biosynthesis and degradation proteins [BR:
ger01011
]
Precursor biosynthesis
Amino acid ligase
KP004_01640
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
QWV93923
LinkDB
All DBs
Position
372264..373778
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AA seq
504 aa
AA seq
DB search
MKLRQLLACVPGAKVTGDDAIEIGSLCYDSRQATPGSLFFALRGVKSDGTEFVASAVKGG
AVAIIADRPCAVAGVTCVEVPDARRAMSLMAAVFYGTPTGDIPLVGITGTNGKTTTTYLI
EGIMAEAGIPAAVLGTISYRFGDTNIPAPNTTPESVDLQRILRDLVDQGAKGAVMEVSSH
SLEQRRADGCIFDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDLLTPNVHKPLRRAVIN
LDDPYGARIAADSAAPVLTYAVNGPADLSVAEVKFSVHGISCRLNSPVGEININSDLLGR
FNLYNIMGAVGAGLALGISKEAIEAGIEGHKKVPGRLERVPNDQGIIVLVDYAHTGDALE
NVLSTIAELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDLAIVTSDNPRTEDPQAILA
DVRAGIPAGLKEYALEELEGGLREKGFATIESRRTAVRAAVLAARPGDIVLLAGKGHEDY
QIVGTEKFHFDDREEAAAALKLRA
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgagacaactgctggcttgtgtcccgggcgccaaggtcaccggggacgacgcc
atcgagatagggtcgctctgctacgactcgcggcaggcgacgccaggctcgctcttcttc
gccctgcgcggggttaagagcgacggaacggaattcgtggcatccgctgtaaaggggggg
gcggtcgcaattattgcggaccgcccctgcgccgttgccggggtcacctgcgtcgaggtc
ccggacgcgcgccgcgccatgagcctcatggccgccgtcttctacggcacccccaccggg
gacatcccgctggtcggcatcaccggcaccaacggcaagaccaccacgacctacctcatt
gaggggatcatggccgaggccggcatcccggccgcggtgctggggaccatcagctaccgc
ttcggcgacaccaacatcccggcccccaacacgacgccggaatcggtggatctgcagcgc
atcttgagggatctcgtggaccagggggctaagggcgcggtaatggaagtctcctcgcac
tccctggaacagcgccgtgccgacggctgcatcttcgacgtggccatcttcaccaacctg
acccgcgaccacctcgattaccacctcgacatggagtcctactaccagagcaagctccgg
ctcttcaccgacctgttgaccccgaacgtgcacaagccgcttcggcgtgcggtgataaac
ctggacgacccgtacggggcgaggatcgcggccgactcggcagcgccggtgttgacctac
gcggtgaacggcccggccgatctgagcgtcgccgaggtgaagttctcggtgcacggcatc
agctgccgtctcaactcgccggtgggggagatcaacatcaactccgacctcctgggccgc
ttcaacctgtacaacatcatgggtgccgtgggggcggggcttgcgcttggcatctccaag
gaggccatcgaggccggcatcgaggggcacaagaaggtgccggggcgcctggagcgggtc
cccaacgaccaggggatcatcgtgctggtcgactacgcccataccggcgatgccctggag
aacgtcctttccaccatagccgagctgaagaccgaccggatcatcaccatattcggctgc
ggcggcgaccgcgacaagggtaagcgcccggtgatgggcgagatcgccgcccgttacagc
gacctcgccatcgtcacctcggacaacccgcgcaccgaggatccgcaggccatcctggcg
gatgtccgggcgggcatcccggcgggtctgaaggagtacgcactggaggagctggagggg
gggctgcgcgagaagggcttcgccaccatcgagtcccggcgcaccgcggtgcgcgccgcc
gtactggccgcccgcccgggtgacatcgtccttctggccggcaaggggcacgaggattac
cagatcgtcggcacggagaagttccacttcgacgaccgtgaagaagctgccgccgcgctg
aaactgagggcgtaa
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