KEGG   Gramella flava: GRFL_1685Help
Entry
GRFL_1685         CDS       T04640                                 

Definition
(GenBank) ATP-dependent DNA ligase LigC
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
gfl  Gramella flava
Pathway
gfl03030  DNA replication
gfl03410  Base excision repair
gfl03420  Nucleotide excision repair
gfl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:gfl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GRFL_1685
   03410 Base excision repair
    GRFL_1685
   03420 Nucleotide excision repair
    GRFL_1685
   03430 Mismatch repair
    GRFL_1685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gfl03032]
    GRFL_1685
   03400 DNA repair and recombination proteins [BR:gfl03400]
    GRFL_1685
Enzymes [BR:gfl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GRFL_1685
    6.5.1.6  DNA ligase (ATP or NAD+)
     GRFL_1685
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     GRFL_1685
DNA replication proteins [BR:gfl03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    GRFL_1685
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     GRFL_1685
DNA repair and recombination proteins [BR:gfl03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     GRFL_1685
   NER (nucleotide excision repair)
    Other NER factors
     GRFL_1685
   MMR (mismatch exicision repair)
    Other MMR factors
     GRFL_1685
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: APU68409
UniProt: A0A1L7I466
LinkDB All DBs
Position
1932459..1934051
Genome map
AA seq 530 aa AA seqDB search
MKLFADLIKKLDTTNKTTLKVEALTDYFLNAPSKDKVWTIAILSHRRPPRPVNTTLMRNW
ASELANIPLWLFEESYHIVGDLAETIALVIPPSEASTEKSLNQFLQEIIELKPRSEEEKK
EYLFENWLNLNYYERFVFTKLITGSFRIGVSQKLMTRALSRATEIDEDILAYKLMGNWDP
ARISFNKLILEENEEDFLSKPYPFYLAYAIEEEPQELGDVSEWSAEHKWDGIRSQVIIRN
NELFVWSRGEELVTDKYPEFEAFVNTIPNGTVIDGEILPFPEGQIGTFKDLQTRIGRKSI
TKKLLEKTPVILKAYDILEWDGEDIRNKSFRYRREILEKLFAEVSSEGIPLYLSENIRFE
SWEEAAKEREKAREVMSEGLMLKRFDSPYLVGRKKGDWWKWKVDPLTIDAVLTYAMRGHG
RRSNLFTDYTFGLWDEEKEELVTFAKAYSGLTDKEFRKLDAWIKKNTLERFGPVRSVTPQ
HVFEIAFEGIAESSRHKSGVATRFPRILRWRTDKKIEEANTLDDLKAMIP
NT seq 1593 nt NT seq  +upstreamnt  +downstreamnt
atgaaactttttgccgatctcatcaaaaaactcgacaccacgaataaaaccactttgaaa
gtagaggcgctgaccgattatttcctgaacgccccttcaaaagacaaggtctggacgatc
gcgattttaagtcaccgccgtccgccacgacctgtgaataccactcttatgagaaattgg
gcttcagaactggcaaatattccgttgtggctctttgaggaatcctatcatattgtgggt
gatttagcggaaaccattgcgctggtcattccaccttccgaagcgtctactgaaaaaagc
ctgaaccagtttcttcaggagatcatcgaactgaagccgcgttccgaagaagagaagaaa
gaatacctttttgagaactggctcaacctgaactattacgagcgctttgtatttacgaaa
ctgatcaccgggagtttccggattggggtaagccagaaacttatgacgcgcgcactttct
agagcgaccgagattgatgaggacatcctggcttataaactgatggggaattgggaccct
gcaaggatttctttcaataagctgattctggaagaaaacgaagaagattttttatccaaa
ccttacccgttctatctcgcctacgcgatcgaagaagagccgcaggagcttggggatgtg
agcgagtggagcgcagaacacaagtgggacggcatccggtcacaggtgatcatacgaaac
aatgaactttttgtgtggagcagaggggaagaactggtaaccgataaatacccggaattt
gaggcttttgttaataccattccgaatggaacggtgatagatggtgagattttaccattt
ccggaaggacagatagggactttcaaagatttgcaaacaagaattggaaggaaaagcatc
acgaaaaagctgctggagaaaaccccggtcattttgaaagcctacgatattctggaatgg
gatggtgaagatatcaggaataaaagttttcggtacaggcgcgaaattctcgaaaagtta
tttgccgaggtttcttccgaagggataccgttgtatttatctgaaaatattcgttttgaa
agttgggaagaggccgcaaaggaacgggaaaaggctcgcgaagtcatgtcagaaggcctg
atgctgaagcggtttgattctccctatttagttggccggaaaaaaggagactggtggaaa
tggaaagtagatcccctcaccatcgatgcggttcttacgtatgccatgcgtggccacggc
cggcgcagcaatttgtttacagattatactttcgggctttgggatgaagaaaaagaagaa
ctggtcacttttgccaaagcttactcgggcctcactgataaggaattccgtaaactggat
gcctggatcaagaagaacaccctggagcgatttggaccggttcgcagcgtgaccccacag
catgtttttgaaattgcttttgaaggaatcgcggaatccagccgtcataaaagtggtgtg
gcaacgcggtttccgcggatcttaagatggcgaaccgataaaaagatcgaggaggcgaat
accttagacgacctgaaggcgatgattccctga

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