Geospiza fortis (medium ground-finch): 102031762 Help Entry 102031762         CDS       T03755                                  Gene name THBS1 Definition (RefSeq) thrombospondin 1   KO K16857   thrombospondin 1 Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr04115   p53 signaling pathway gfr04145   Phagosome gfr04350   TGF-beta signaling pathway gfr04510   Focal adhesion gfr04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:gfr00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     102031762 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102031762 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     102031762 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     102031762 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     102031762 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:gfr04131]     102031762 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:gfr00536]     102031762 (THBS1)    04990 Domain-containing proteins not elsewhere classified [BR:gfr04990]     102031762 (THBS1) Membrane trafficking [BR:gfr04131]  Endocytosis   Phagocytosis    Opsonins     102031762 (THBS1) Glycosaminoglycan binding proteins [BR:gfr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    102031762 (THBS1) Domain-containing proteins not elsewhere classified [BR:gfr04990]  Thrombospondin domain-containing proteins   Thrombospondins    102031762 (THBS1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 EGF_CA TSP1_ADAMTS cEGF Laminin_G_3 TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  102031762 NCBI-ProteinID:  XP_014166272 UniProt:  A0A6I9ZDQ2 LinkDB All DBs Position Un AA seq 1211 aa AA seqDB search MGPATALCLLLLVLGGSETKRTAESRNDDNSVFDLFELIGFMKKGAGRRAPGVYLVKGPE SSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVEQKDGS GHVFSLVSNGKAGSLDLSLSADGKQQLVSVEDVLLATGHWKNITLFVQEDRAQLYVGCEK MENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS SSTSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTL QDRVRKVTEENEIIAKVVQITPGACIHNGVLHKNKEEWTIDSCTECTCQNSATICRKVSC PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKP CEGEARENKACQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG EARGTQVCNKQDCPIDGCLSNPCFAGATCTSAPDGSWKCGACPAGYHGDGIHCQDIDECK EVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMSNKQVCKPRNPCTDG THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC KKDNCPNLPNSGQEDYDKDGIGDACDSDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR CDNCPYNHNPDQTDTDNNGEGDACAIDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC DNCPLEHNPDQEDTDSDLIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVEIS ETDFRKFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMA DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRGKNDTAFKRSYINELVQEHKSQEGK LNCDLSWFRFK NT seq 3636 nt NT seq  +upstreamnt  +downstreamnt atggggccagcgactgctctctgcctccttctcctcgtgctcggcggctcagagaccaag cgtactgcagagtcccggaatgatgataacagcgtcttcgatctctttgaactcattggc ttcatgaagaagggagctgggcgccgggcccctggggtgtacctggtgaagggaccagaa tcctccagccctgcttaccgcattgaagatgccagtcgcatccctgctgtccctgactcc aagttccaagacttattagatgccattcatgctgagaaaggcttcattctcctggccact ctccggcaagccaagaagagcagaggcacattgctctccgtggaacagaaagatggctct ggtcatgtcttcagtctagtatcaaatggcaaggcaggctccctggacctcagcctttct gctgatggcaagcagcagttagtgtcagtagaggatgtcttgctagctacaggacattgg aagaatatcaccctgtttgtgcaggaggaccgagctcagctctatgtggggtgtgagaaa atggagaacgctgaactggacatccccatccagaacatcttcactagggacctcgccagc agtgccaggctccgtattgccaaaggaggagtcaatgacaacttccagggtctgctgcag aatgtgcggtttgtgtttggaacaactctggaaactatcttgcggaacaaaggctgctcc agctccactagtgcaatcattactttggacaaccccatcaatggttccagcccagctatc cgcactaattacattggccataaaacaaaggacatccaagcagtctgtggattttcctgt gatgaactaacaaatatgtttgtggaactgcaagggctgcggtccatggttacaacactt caagacagagtccgaaaagtgactgaagaaaatgaaatcattgccaaagtagtccagatc actcctggagcgtgcattcataatggagtcttgcacaaaaataaagaggagtggactatt gacagctgcactgaatgtacttgccagaactctgccactatatgccggaaagtgtcctgt cctctcatgccttgttccaatgccaccgtgcctgatggggagtgctgccctcggtgctgg cctagcgactatgcagatgatggatggtctccttggtctgaatggacctcgtgttctgtg acctgtggtaatgggattcagcagagaggccgttcctgtgacagtctcaacaaccgctgt gaaggctcctctgtacagactaggacttgccaccttcaggagtgtgataagagatttaaa caggatggtggctggagtcactggtcgccatggtcatcatgctctgtcacttgtggcacg ggcatcattactagaattcgtctttgcaactctccagtaccacagctgaatggcaaacct tgtgagggtgaagcaagagaaaacaaagcctgccagaaagatccttgcccaattaatggc aactggggaccatggtctccatgggatgcttgcacagtgacatgtggaggaggacttcag aagcgaagccgtctctgcaataatcccgagcctcagtatggtgggaagacttgtgtaggt gaagctagagggactcaggtctgcaacaaacaggactgtccaattgatgggtgtctgtct aatccctgctttgcgggggctacgtgcaccagtgcccctgatggttcctggaagtgtggt gcctgtcctgctggctaccatggtgatggtattcactgccaagacattgatgagtgcaaa gaggttcctgatgcctgctttgtcttcaatggagtgcacaggtgtgagaatactgaacct gggtacaactgtctgccctgcccaccacgtttcactggaacacagccatttggccgcagt gttgaggatgccatgagtaacaaacaggtctgcaagccacgtaatccatgcacagatgga acacatgactgtaacaagaatgccaaatgcaattaccttggccactttagtgaccccatg tatcgctgtgaatgtaaaccaggctatgctggcaacggcatcatctgcggagaagatact gacttggatggatggccaaatgagaacctggtttgtgttgccaatgctacttaccactgt aaaaaagataactgccctaatctgcctaactcagggcaggaagactatgataaggatggg attggtgatgcctgtgacagtgatgatgatgatgatggcattcctgatgaccgggacaac tgtccattcatctacaacccacagcagtatgactatgacagggatgatgttggtgaccgc tgtgacaactgtccctacaatcacaaccctgatcaaactgacactgacaacaatggagaa ggagatgcatgtgcaatagatattgatggagatggggtgcttaatgaaagggacaactgc cagtatgtctacaatgtagaccagagggatacagacttggatggtgttggagatcagtgt gataactgtccactggaacacaaccctgaccaggaagataccgattctgacctcataggt gatcaatgtgacaacaaccaggacatagatgaagatggtcatcaaaataaccttgataac tgcccctatgtgcccaatgccaatcaagctgaccatgacaaggatggaaaaggtgatgcc tgtgaccatgatgatgacaatgatggtatccctgatgacaaagacaactgcagattggtt gccaacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac tttgaccaagacagcgtgccagacattgatgatatctgccctgaaaatgtggaaattagt gagactgatttccgaaaatttcagatgattcccctggatcccaaaggaacatcccagaat gatccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgac cctggccttgcagtcggttttgatgaattcaatgctgtggacttcagtggtaccttcttt atcaatacagaaagggatgatgattatgctggctttgtatttggctaccaatctagcagt cgtttctatgttgtcatgtggaagcagatcacccagtcttactgggactccacaccaacc aaagctcaaggctattcaggtctctccatcaaagttgtgaattccaccactggtccagga gaacaccttcgtaatgctctgtggcacacaggaaacactcctggccaggtgagaactttg tggcatgatcctcgtcacataggctggaaagacttcactgcatacaggtggcgacttagc catagaccaaagaccggctacatcagggttgtaatgtatgaagggaagaaaatcatggca gactcaggaccaatctacgataaaacctatgctggtggtcggctaggattatttgtcttc tctcaagaaatggtgttcttctcagaccttaaatatgaatgcagaggtaagaatgacact gcatttaagagatcctatataaacgaattggttcaagaacataagagccaagagggaaag ttgaactgtgatctttcgtggttcaggttcaaatga

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