KEGG   Geospiza fortis (medium ground-finch): 102032717Help
Entry
102032717         CDS       T03755                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    102032717 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gfr03400]
    102032717 (LIG4)
Enzymes [BR:gfr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102032717 (LIG4)
DNA repair and recombination proteins [BR:gfr03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     102032717 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme AAA-ATPase_like Tox-REase-9
Motif
Other DBs
NCBI-GeneID: 102032717
NCBI-ProteinID: XP_005422734
LinkDB All DBs
Position
Un
AA seq 912 aa AA seqDB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKSKTRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLGLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLHLI
TQSTALEQKWLIRMIVKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPTVSL
SDVSIMLFSAFKPMLAAIADVPQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDEKLGHEVLRKRYEILSTVFTPVKGRIQVVHKRSARTRKEVV
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGMGKYSKSDLESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLK
EVFSRMKDNKAMPLDLIAELEERYWCSSCQLGIFRGSTMYVDCYAVVNEPQSKIPGTTLS
TRALELRFYGAKVVSHLEEGVSHVVVGDDCSRVEEMKALRRTFGKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgcacctgtttcacagcctcctcctaaaaaaacggtggcctctcacgtgcca
tttgcagatctctgttctactctggagcgaatacagaagtccaaaactcgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccatgatgcactccatcaa
aaagagaaagatgtcacagattccttttacccagctatgcggcttattctcccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttggtttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacgcct
acgggctcacgtggagatgctggggattttgcaatgatcgcctactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcaatt
gctaacaataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcatttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattgtaaaggatctaaag
cttggtgttagtcaacaaactatattttcaatttttcatcctgatgctgctgaattgcac
aatgttactaccgatttggaaaaagtttgcagacaactgcatgatcccactgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtcccgcaaattgagaaacaaatgagtaaccagacattctacatagaaaccaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgcaatggg
tttgactatacgcagcagtttggtgcttcacctcttgaaggttccttaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaggcacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatgag
aagttggggcatgaagtactaaggaaacgatatgaaatcttaagtactgtatttacccca
gtaaagggcaggatacaggttgtccataagagaagtgccagaacaagaaaagaagtagtt
gatgctttaaatgaagccatagataacagagaggaaggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgagctggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgtgctgttgcagagacgccccctccgaatgaa
aagccgaccattttccactccatttgtcgtgttggctccggctatactatgaaagagttg
tatgatctgggcttgaaactggctaaacactggaagccctaccataggaaggaccctcct
ggtaacattttgtgtggcgctgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtact
ttgagattccctcgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgctagaagacctcagaagcaaagcacaaggaaagctggcatctaagcacctt
catatagatgagtacgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaag
tctgacctggaaagcagaatagcccagtgtggtggcagtgtggtacagaaccctgggcca
gagacatactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagaatggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagagcattttgct
cgtgagtatgattgttatggagacagctacacagcaaacacagatgttgcgcagctcaag
gaagtgttctcaagaatgaaagacaataaggcaatgcctctggacttgattgcagagcta
gaagaacgttattggtgtagcagttgtcaacttggtatattcagaggaagcactatgtat
gtggactgttatgctgttgttaatgagccccaaagcaaaatccctggaactacactttca
actagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtgggagatgattgttcacgggtagaagagatgaaagcactcagg
agaacatttgggaagaaatttaaaattgtatccgagctgtgggtaacacactcagtggag
gaaggagtcgcaaaaaatgaaaatcagtacttagtttaa

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