Geospiza fortis (medium ground-finch): 102033642
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Entry
102033642 CDS
T03755
Symbol
MSH2
Name
(RefSeq) mutS homolog 2
KO
K08735
DNA mismatch repair protein MSH2
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102033642 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102033642 (MSH2)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102033642 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
102033642
NCBI-ProteinID:
XP_014166623
UniProt:
A0A6I9ZE13
LinkDB
All DBs
Position
Un
AA seq
922 aa
AA seq
DB search
MHKKEVVCDGGGNADQFRVCENLTHAYVAQKEANTRTGHSSPHGDLMAVTNWHGCLGHPG
TEKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDWYLAYKGSPGNLAQF
EDILFANNDMSTAIGVVGVKLSAADGQRVVGVGYVDTTLRKLSVCEFPDNDQFSNLEALL
VQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDIVQDLNRLLKSKKEE
QLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLSQYMVLDNAAVQALN
LFQSSVENANSAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIEERLNLVEAFVMDPE
LRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMFQAINQLPNVVQALQKHEGAHQML
LLAVFITPLNDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPNLTELREKMNELEEK
MQSLLKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNSKYGIIDTQKNGVKF
TNSKLSAINDEYIKNREEYEEAQDAIVKEIINIASGYAEPMQTMNDVIAQLDAIVSFAHV
SNGAPVPYVRPVVLEKGQGRMVLRGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPN
MGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDSQLKGVSTFMAEMLE
TASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIATKICGFAMFATHFHELTALA
DQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFPKHVIESAREKALEL
EEFQNIGKSKESEGEPPAKKLYREREEGEKIIQDFLCQVKALPLTDMSEEDIKVKLKQLR
NDVLAKNNSFVNEIISRTKVTS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaaaaggaggtggtctgtgatggtggaggaaatgctgaccagttcagagtgtgt
gaaaacctcacacacgcttatgttgcccagaaagaggctaacacccgcacaggacactcc
tctcctcatggagacctcatggcagtgaccaactggcacggctgcctggggcaccctgga
actgagaagcttgagagtgttgtgcttagtaaaatgaactttgaatcctttgtgagggac
ctgcttctggttcgtcattacagagtcgaagtttacaagaacaaagcagggagcaaatct
gtcaaagaaaatgactggtatttggcttacaagggttctccaggaaatcttgcccagttt
gaggacattctctttgccaacaatgacatgtccacagccattggggttgtgggggtgaag
ctgtctgctgctgatggacagagggtggtaggagtgggctatgtcgacactacactgaga
aaattgagtgtttgtgagttcccagataatgatcagttctccaaccttgaagctctactg
gttcagctgggcccgaaggagtgtgtgctgccaggaggagagactgcaggagagatgggg
aaactcagacaagtcattcagaggggaggaatcctgattacagacaggaagaaggcagat
ttcacaacaaaagatattgttcaggatctcaaccgcttgttgaaatcaaaaaaggaagag
cagctgaacagtgcagcactgccagagatggaaaagcaggttgctgtttcgtctttgtca
gctgttatcaagtttttggagttgctgtcagacgagtctaattttggacagtttgaactg
actacctttgatcttagtcaatatatggttctagacaatgcagctgttcaagccctcaac
ctttttcagagttctgtggaaaatgcaaattctgcacagtctctagctggtttgctgaat
aaatgcagaacccctcaaggacaaagactagttaatcagtggatcaaacaaccacttatg
gacaagaccagaattgaagaaaggttgaatttggttgaagcttttgtgatggatccagag
ctacgtcagtgccttcaggaagatctgttacgtcgctttccagacctcaaccgcctggca
aagaaatttcagaggcaagcagcaaacttacaagactgttacagaatgttccaggctatc
aatcaactgcctaatgttgtacaagcactacagaaacatgaaggagctcaccagatgttg
ttgttggctgtatttataacacctcttaatgatatctgctctgacttctcaaagtttctg
gagatgatagaaacaacattggacatggaaaaggtggagaatcatgaatttctcgtcaag
gcttcttttgatcctaatttaacagaattaagagagaagatgaatgaactggaagaaaaa
atgcagtccttactaaagactgcagccaaagagctaggtttggaagctggcaaaagtatc
aagctggagacaaattcacagtttgggcatcactttagggtaacttgtaaggaggaaaaa
gctctccgtaacaattcgaaatatggaatcattgatacacagaagaatggtgtgaaattt
actaacagcaaactgagtgccatcaatgatgaatatataaagaacagggaagagtatgaa
gaggctcaggatgcaattgttaaggaaatcattaacattgcttcaggttatgcagagccc
atgcagaccatgaacgatgtgatagcccagctggatgccattgtcagctttgcccacgtg
tccaacggggccccggtgccctacgtgcggcccgtggtgctggagaagggccagggcagg
atggtgctgagaggggcccggcacccctgcatcgaggtgcaggatgaggtggccttcatc
cccaatgacatcaccttcgagaagggcaagcagatgttccacattattactggccctaac
atggggggaaaatcaacatacatccggcagacaggggttattgttctcatggcccagatt
gggtgttttgtgccctgtgagtctgcagaaataacgattgtggattgtatcctggctcgg
gtgggagcaggagacagccagctcaaaggagtgtctactttcatggctgagatgctggaa
actgcctcaatcctcaggacagcaactgaaaactccctgataatcattgatgagctggga
agaggaacttccacctacgatggctttggcttagcctgggctatctcagaatacattgcc
accaaaatctgtgggtttgccatgtttgctacacacttccatgagctcacagctcttgct
gaccaagtgccaacagtgaataacctccatgtcactgctctgaccagcgatgacacactc
accatgctttatcgggtcaaggaaggtgtttgtgaccagagttttgggatacatgtagca
gagttggcagctttcccaaaacatgtgatagaaagtgcaagagagaaagcattggagctg
gaggagtttcaaaacattggcaagtccaaggaatctgaaggagaaccaccagccaagaaa
ttatacagagaaagagaggaaggtgaaaagataattcaggattttctttgtcaagtgaaa
gcattgcccttgacagatatgtcagaagaagacatcaaagtcaagttgaagcagctgaga
aatgatgtgctggcaaagaacaacagttttgtgaatgaaataatttctcgaacgaaagtt
acatcatga
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