Geospiza fortis (medium ground-finch): 102036387
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Entry
102036387 CDS
T03755
Symbol
COL9A2
Name
(RefSeq) collagen type IX alpha 2 chain
KO
K08131
collagen type IX alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04510
Focal adhesion
gfr04512
ECM-receptor interaction
gfr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102036387 (COL9A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102036387 (COL9A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102036387 (COL9A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gfr00535
]
102036387 (COL9A2)
Proteoglycans [BR:
gfr00535
]
Extracellular matrix (ECM) proteoglycans
Others
102036387 (COL9A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102036387
NCBI-ProteinID:
XP_014165508
LinkDB
All DBs
Position
Un
AA seq
708 aa
AA seq
DB search
MNHPVFPGNGGRQLAKAGTGNGDGKWDEDGDGGPLPPPPPPPPPPPRPALPLSRSAAGAR
CPPRSVPARLALARAPPVGSQLWLLLQACCLCLAQLRGPPGEPGPRGPPGPPGVPGADGI
DGDKGPVGSAGSPGVKGEPGAPGPDGPPGKPGIDGLTGAKGEPGPTGRPGTKGQPGLPGP
PGLPGPSLPGPPGLPGQVGLPGEIGVLGPKGDPGPDGPRGPPGPPGKPGLPGHLQGLEGS
ADFLCPTSCPPGPKGPQGLQGLKGHRGRPGALGEPGKQGEPGPKGDVGASGEQGVPGPPG
PQGLRGYPGMAGPKGETGPAGYKGMVGSIGAAGRPGKEGPKGPPGSPGDKGELGGRGIRG
PQGDIGPKGENGLPGIDGKDGTPGIPGVKGGTGQAGRPGTPGHRGQAGLPGQPGSKGGPG
DKGEPGPRGHPGATGAPGQLGEPGPRGEQGPQGVPGPKGDRGERGLVGPPGEQGRAGPKG
EQGPPGIPGPQGLPGVKGDKGSPGKTGPKGSTGDPGVHGLAGLKGEKGESGEPGPKGQQG
IQGDLGFPGPTGDAGAPGIRGYPGPPGPRGLVGERGVPGMPGPRGTAGRDAGDQHIVDVV
LKMLQEQLAEVAVSAKRAALGGVGAMGPPGPPGPPGPPGDQGPHGPMGPRGVPGILGAAG
QIGNVGPKGKRGEKGERGEVGRGHPGMPGPPGIPGRPGVPSSGGIKES
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatcccgtgttccctgggaatggggggcggcagctggcgaaggcgggaactggg
aatggggatgggaaatgggatgaggatggggatggcggtccccttcctcctcctcctcct
cctcctcctcctcctcctcgcccggccctcccgctgtcccggagcgctgccggcgctcgg
tgcccgccgcgctcggtgccagcccggctcgccctggcccgtgccccccccgtggggtca
cagctctggctcctgctccaagcctgctgcctctgcctggcccagctccgagggccacca
ggagagcctggcccacgagggccccctggtcccccaggagtgccaggagctgatggcatc
gatggtgacaaaggccctgtaggatctgccggctccccgggtgtcaagggcgagcccgga
gctcctggcccggatggaccgccagggaagcctggcattgatggcctgacaggagccaaa
ggggagccaggacccacaggcaggccaggaaccaaaggccagcccggactcccagggcca
ccagggctccctggtccttcactgccaggaccccctgggcttccaggccaggttggactt
cccggggagatcggagtgctgggacccaagggtgaccctggacccgatggcccgaggggt
cccccaggccctccagggaaacctggactcccaggacacctccaaggcctggaaggcagc
gctgatttcctgtgtcccaccagctgccccccaggtcccaagggcccccagggactgcag
ggactgaagggacacagaggccgccccggtgccctcggagagcctggaaagcagggagag
ccgggccccaagggggacgttggtgcctctggagagcaaggagtcccaggccctccggga
cctcagggcctcagggggtaccctggcatggcaggacccaaaggggagacgggccctgct
ggctacaagggcatggtcgggagcatcggagccgccgggcggccgggcaaggaaggcccc
aagggaccacctgggagccctggtgacaagggagagctgggtggccgtggcatcagggga
ccgcagggtgacatcggccccaagggggagaatggtctgccgggcatcgatggcaaggat
ggcaccccagggatcccaggagtgaagggtggcacaggacaggccggacgcccaggaacg
ccgggacaccggggacaagctggactgccgggccagccaggaagcaaaggtggcccaggt
gacaagggtgaaccaggccctcggggccaccccggtgccaccggtgccccagggcagctt
ggcgagcccggacctcggggcgagcagggcccgcagggtgtgcccgggccgaagggtgac
aggggcgagcgtggcctcgtgggacccccgggggagcagggcagagcggggccaaagggt
gagcagggcccaccaggcatcccaggaccccaaggcttgcctggagtcaaaggagacaag
ggctctccagggaaaaccggccccaaaggcagcactggagatccaggtgtccacggcctg
gcagggctcaagggagagaagggagagtcaggagagccaggacccaagggacagcaaggc
atccagggagacctcggctttcccggccccacgggggatgcaggagcgccgggaattcgg
ggctatcccggcccgcccggcccgcgggggctggtgggggagcgcggagtgccgggaatg
ccgggcccgcggggcacagccggccgggatgctggggaccagcacatcgtggacgtggtg
ctgaagatgctgcaagagcagctggcagaggtggctgtgagcgccaagagagccgccctg
ggtggggtcggggccatgggaccccccggtccccccggccccccagggccacccggtgat
cagggaccccatggccccatgggaccccgaggtgtccccggaatcctgggagctgccggg
cagatcggcaatgttggacccaaagggaagagaggagagaagggtgagcggggagaggtt
ggccgtggccacccgggaatgccgggtcctccagggatcccaggtagaccaggtgtcccc
agttctggcggcataaaagaatcttag
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