KEGG   Geospiza fortis (medium ground-finch): 102037223
Entry
102037223         CDS       T03755                                 
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    102037223 (LIG3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gfr03400]
    102037223 (LIG3)
Enzymes [BR:gfr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     102037223 (LIG3)
DNA repair and recombination proteins [BR:gfr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     102037223 (LIG3)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 Synaptonemal_3 aRib
Other DBs
NCBI-GeneID: 102037223
NCBI-ProteinID: XP_005425458
LinkDB
Position
Un
AA seq 903 aa
MAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCIFEKL
DKARATTKKIEDITDLEGWEELQDEEKETINKYISEANSKTGGTPKKKVIVQAKLTATGQ
LTTKDPPKKFSGFSAKPKNSEDSPAKCAQKPSLSAARCDPQHKDCLLREFRKLCAMVAEK
PSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKMLLPGVIKIVYNLNDKQIVKLFXXXXSR
IFNCNQEEMIRDLEQGDVSETIRIFFEQSKTCPPAAKSLLTIQEVDEFLMQLSKLTKEDD
QQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVE
RVLQNQQEAEKVPGLKKTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGE
RVQVHKNGDHFSYFXXXXXSLQPVLPHKVAHFKDFIPQAFPGGQSMILDSEVLLIDNKTG
KPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPNXDP
VLRDETCHKSFRSGRHDHRVIREGLEGLVLKDIKGNYEPGKRHWLKVKKDYLNEGAMADT
ADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGHDDATLARLQTELDMVK
ISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTR
IRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEDESTAGSSGENDGNSRSSTPHSSI
KSPPSKSPAKAQKAEDSKGIVGSPQKSEERRGEKRKASEMEDNGKKPLLDIFTGVKLYLA
PSVPDFARIRRYFIAFDGDLVEEFDTASATHVLGDIDDNPGAQRVTPRWIWECIRKRRLV
APC
NT seq 2712 nt   +upstreamnt  +downstreamnt
atggcggagcagcggtactgcgtggactatgccaagcggggcaccgcgggctgcaagaag
tgcaaggagaagatcgtgaaggggatggtgcgcattgggaagattgttcccaatcctttc
accgagtctggaggggacatgaaggagtggtaccatgtcaagtgcatctttgagaagctg
gacaaggcccgggccaccactaagaaaattgaagacatcacagacttggaggggtgggaa
gagctgcaggatgaggagaaggaaacaatcaacaagtacatctcagaagccaattccaag
actggaggtaccccaaagaaaaaggtgatagtgcaggcaaaactcactgccacaggacag
ctgaccacaaaagatccaccgaagaaattctctggattctctgccaagccaaagaattca
gaagattctcctgcaaagtgtgcccagaagccgagcctgtctgcagcccggtgtgacccc
cagcacaaggactgcctgctgcgcgagttccgcaagctctgcgccatggtggctgagaaa
ccaagctacaacgtcaaaacccagatcatccaggacttcctcaggaagggatctgcagga
gatggttttcatggtgatgtatacctgaccattaagatgctgttaccaggtgtcattaaa
atagtttacaacttgaatgataagcagattgtaaagctgttcannnnnnnnnntagcagg
atttttaactgcaaccaggaagaaatgatccgggacctggagcagggagatgtttctgag
accatccggattttcttcgagcagagcaagacctgtcctccagcagccaagagcctcctg
accatccaggaggtggatgagttcctcatgcagctgtccaagctcaccaaggaggatgac
cagcagagtgtcctgcagcagatcagtcgcaggtgtacaggcaatgacctgaagtgcatc
atcaggctaattaagcatgacttgaaaatgaatgctggagcaaagcatgtgttggacgct
ctggatcccaacgcctacgaggcgttcaaggcctcgaggaacctgcaggacgtggtggag
agggtgctgcagaaccagcaggaggcagagaaggtgccagggctgaagaagaccctgagt
gtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatc
gagtacgccatgaagaagtgtcccaatgggatgtacgccgagatcaagtacgacggcgag
cgcgtgcaggtgcacaagaacggggatcacttcagctacttcagnnnnnnnnnnnggagc
ctccagcctgtgctcccccacaaagtagcccatttcaaggatttcatcccccaggctttc
cctggtgggcaaagtatgattctggattcagaagttctcctgattgacaataaaactggc
aagccacttccttttgggactcttggtgtgcacaagaaagctgctttccaggatgccaac
gtttgcctgtttgtgtttgactgcatctacttcaatgacatcagcctgatggacaggccc
ctctgtgaacggcgcaagttcctccacgacaacatggtggagatccccaacnaggatcct
gttctcagagatgaaacatgtcacaaaagcttcagatctggcagacatgatcaccgggtc
atccgggaggggctggaagggctggtgctgaaggacataaagggtaattatgagccaggg
aaacgccactggctgaaggtgaagaaggattatctcaacgagggggcaatggctgacact
gctgacctggtggtgctgggggctttctatggacaaggcagtaaaggtgggatgatgtcc
atcttcctcatgggctgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgc
tctggtggccacgatgacgccaccctggcacgtctgcagacagagctggacatggtgaag
atcagcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactaccca
gacttcattgtcccagatccaaagaaagccccggtgtgggagatcacgggggccgagttc
tccaaggccgaggcgcacacggctgacgggatctccatccgcttcccgcgctgcacccgc
atccgcgatgacaaggactggcagacagccaccaacctgcagcagctcaaggagctgtac
cagctctccaaggagaaggctgatttcagtgttacagctggggaggaagatgagtccaca
gctggcagcagtggagagaatgatgggaattccaggtcttccacacctcacagcagtatt
aagagtcccccaagcaagtcacctgcaaaagcccagaaggcagaagacagcaaaggaatc
gttggatcccctcaaaaatccgaggagagacgaggggagaaaagaaaagcgtctgagatg
gaggacaatggaaaaaagcccctgctggacattttcacgggggtgaagctgtacctggcg
ccctcggtgccggactttgcgcggatccgccgctacttcatcgccttcgacggggacctg
gtggaggagttcgacacggcctcggccacccacgtgcttggggacattgatgacaacccc
ggggcgcagcgtgtgactcccaggtggatctgggagtgcatccggaagcgcaggctggtg
gcgccgtgctag

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