Geospiza fortis (medium ground-finch): 102037223
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Entry
102037223 CDS
T03755
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
102037223 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102037223 (LIG3)
Enzymes [BR:
gfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102037223 (LIG3)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
102037223 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
Synaptonemal_3
aRib
Motif
Other DBs
NCBI-GeneID:
102037223
NCBI-ProteinID:
XP_005425458
LinkDB
All DBs
Position
Un
AA seq
903 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCIFEKL
DKARATTKKIEDITDLEGWEELQDEEKETINKYISEANSKTGGTPKKKVIVQAKLTATGQ
LTTKDPPKKFSGFSAKPKNSEDSPAKCAQKPSLSAARCDPQHKDCLLREFRKLCAMVAEK
PSYNVKTQIIQDFLRKGSAGDGFHGDVYLTIKMLLPGVIKIVYNLNDKQIVKLFXXXXSR
IFNCNQEEMIRDLEQGDVSETIRIFFEQSKTCPPAAKSLLTIQEVDEFLMQLSKLTKEDD
QQSVLQQISRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQDVVE
RVLQNQQEAEKVPGLKKTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGE
RVQVHKNGDHFSYFXXXXXSLQPVLPHKVAHFKDFIPQAFPGGQSMILDSEVLLIDNKTG
KPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPNXDP
VLRDETCHKSFRSGRHDHRVIREGLEGLVLKDIKGNYEPGKRHWLKVKKDYLNEGAMADT
ADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGHDDATLARLQTELDMVK
ISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTR
IRDDKDWQTATNLQQLKELYQLSKEKADFSVTAGEEDESTAGSSGENDGNSRSSTPHSSI
KSPPSKSPAKAQKAEDSKGIVGSPQKSEERRGEKRKASEMEDNGKKPLLDIFTGVKLYLA
PSVPDFARIRRYFIAFDGDLVEEFDTASATHVLGDIDDNPGAQRVTPRWIWECIRKRRLV
APC
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcagcggtactgcgtggactatgccaagcggggcaccgcgggctgcaagaag
tgcaaggagaagatcgtgaaggggatggtgcgcattgggaagattgttcccaatcctttc
accgagtctggaggggacatgaaggagtggtaccatgtcaagtgcatctttgagaagctg
gacaaggcccgggccaccactaagaaaattgaagacatcacagacttggaggggtgggaa
gagctgcaggatgaggagaaggaaacaatcaacaagtacatctcagaagccaattccaag
actggaggtaccccaaagaaaaaggtgatagtgcaggcaaaactcactgccacaggacag
ctgaccacaaaagatccaccgaagaaattctctggattctctgccaagccaaagaattca
gaagattctcctgcaaagtgtgcccagaagccgagcctgtctgcagcccggtgtgacccc
cagcacaaggactgcctgctgcgcgagttccgcaagctctgcgccatggtggctgagaaa
ccaagctacaacgtcaaaacccagatcatccaggacttcctcaggaagggatctgcagga
gatggttttcatggtgatgtatacctgaccattaagatgctgttaccaggtgtcattaaa
atagtttacaacttgaatgataagcagattgtaaagctgttcannnnnnnnnntagcagg
atttttaactgcaaccaggaagaaatgatccgggacctggagcagggagatgtttctgag
accatccggattttcttcgagcagagcaagacctgtcctccagcagccaagagcctcctg
accatccaggaggtggatgagttcctcatgcagctgtccaagctcaccaaggaggatgac
cagcagagtgtcctgcagcagatcagtcgcaggtgtacaggcaatgacctgaagtgcatc
atcaggctaattaagcatgacttgaaaatgaatgctggagcaaagcatgtgttggacgct
ctggatcccaacgcctacgaggcgttcaaggcctcgaggaacctgcaggacgtggtggag
agggtgctgcagaaccagcaggaggcagagaaggtgccagggctgaagaagaccctgagt
gtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaagtccatc
gagtacgccatgaagaagtgtcccaatgggatgtacgccgagatcaagtacgacggcgag
cgcgtgcaggtgcacaagaacggggatcacttcagctacttcagnnnnnnnnnnnggagc
ctccagcctgtgctcccccacaaagtagcccatttcaaggatttcatcccccaggctttc
cctggtgggcaaagtatgattctggattcagaagttctcctgattgacaataaaactggc
aagccacttccttttgggactcttggtgtgcacaagaaagctgctttccaggatgccaac
gtttgcctgtttgtgtttgactgcatctacttcaatgacatcagcctgatggacaggccc
ctctgtgaacggcgcaagttcctccacgacaacatggtggagatccccaacnaggatcct
gttctcagagatgaaacatgtcacaaaagcttcagatctggcagacatgatcaccgggtc
atccgggaggggctggaagggctggtgctgaaggacataaagggtaattatgagccaggg
aaacgccactggctgaaggtgaagaaggattatctcaacgagggggcaatggctgacact
gctgacctggtggtgctgggggctttctatggacaaggcagtaaaggtgggatgatgtcc
atcttcctcatgggctgctacgaccccaagagtgagaagtggtgcacggtgaccaagtgc
tctggtggccacgatgacgccaccctggcacgtctgcagacagagctggacatggtgaag
atcagcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactaccca
gacttcattgtcccagatccaaagaaagccccggtgtgggagatcacgggggccgagttc
tccaaggccgaggcgcacacggctgacgggatctccatccgcttcccgcgctgcacccgc
atccgcgatgacaaggactggcagacagccaccaacctgcagcagctcaaggagctgtac
cagctctccaaggagaaggctgatttcagtgttacagctggggaggaagatgagtccaca
gctggcagcagtggagagaatgatgggaattccaggtcttccacacctcacagcagtatt
aagagtcccccaagcaagtcacctgcaaaagcccagaaggcagaagacagcaaaggaatc
gttggatcccctcaaaaatccgaggagagacgaggggagaaaagaaaagcgtctgagatg
gaggacaatggaaaaaagcccctgctggacattttcacgggggtgaagctgtacctggcg
ccctcggtgccggactttgcgcggatccgccgctacttcatcgccttcgacggggacctg
gtggaggagttcgacacggcctcggccacccacgtgcttggggacattgatgacaacccc
ggggcgcagcgtgtgactcccaggtggatctgggagtgcatccggaagcgcaggctggtg
gcgccgtgctag
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integrated database retrieval system