Geospiza fortis (medium ground-finch): 102039116
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Entry
102039116 CDS
T03755
Symbol
KCNMA1
Name
(RefSeq) potassium calcium-activated channel subfamily M alpha 1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
102039116 (KCNMA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102039116 (KCNMA1)
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
102039116 (KCNMA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
SR-25
Motif
Other DBs
NCBI-GeneID:
102039116
NCBI-ProteinID:
XP_005417305
LinkDB
All DBs
Position
Un
AA seq
1247 aa
AA seq
DB search
MSNNINANNLNTDSSSSPVNVPKMDALIIPVTMEVPCDSRGQRMWWAFLASSMVTFFGGL
FIILLWRTLKYLWTVCCHCGVKNKETQKINGGGDTQADGACKPTDEKEENVAAEVGWMTS
VKDWAGVMISAQTLTGRVLVVLVFALSIGALVIYFIDSSNPIESCQNFYKDFTLQIDMAF
NVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQ
FSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNNQPLTYWE
CVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSY
SAVSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFT
QVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRI
ITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAPGLSTMLANLFSMRSF
IKIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPAVCELVFAKLKLLMIAIEYKSEKRE
SSILINPGNHVKIQEGTLGFFIASDAKEVKRAYFYCKACHDDITDPKRIKKCGCKRPKMS
IYKRMRLACCFDCGRSERDCSCMSGSVHSNMDTLERAFPLSSVSVNDCSTSLRAFEDEQP
STLSPKKKQRNGGMRNSPNSSPKLMRHDPLLIPGNEQIDNMDANVKKYDSTGMFHWCPAK
DIEKVILTRSEAAMTVLSGHVVVCIFGDVKSALIGLRNLVMPLRASNFHYHELKHIVFVG
SLEYLRREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDK
ECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRTSPDNSPVHGLLRQPSITTGANIPI
ITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIR
TLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGD
LFCKALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPYEFELVPTDLIFCLMQFDHN
AGQSRASLSHSSHSSYSSSKKSSSVHSIPSTANRPNRTKSRDSRDKQNATRMNRMGQEKK
WFTDEPDNAYPRNIQIKPMSTHMANQINQYKSTSSLIPPIREVEDEC
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacaatatcaacgccaacaatctcaacacagactcgtcctcctcccccgtcaat
gtgcccaagatggatgcgctcatcatcccggtgaccatggaggtgccctgcgatagccgc
ggacagcgcatgtggtgggctttcctcgcctcatccatggttactttctttgggggactg
tttatcatcctgctgtggaggaccctcaagtacctgtggactgtgtgctgccactgcggg
gtcaaaaacaaggagacccagaagatcaatggtggtggagatacacaggcagatggagcc
tgcaaaccaacagatgagaaagaggagaatgtggcagcagaagtgggatggatgacgtct
gtgaaggattgggcaggagtcatgatatctgcccagacattaactggcagagtacttgtt
gtcttagtcttcgctcttagtattggtgctcttgtaatatacttcatagattcatcaaac
ccaatagaatcctgccagaatttctacaaagatttcacattacagatcgacatggctttc
aatgtgttcttcctactctactttggcttgcgttttatagcagccaatgacaagctatgg
ttttggctagaagttaactcagtggtagatttcttcacggtccctccagtgtttgtgtca
gtatatttaaacagaagttggcttggtttaagatttttaagagcccttagactgatacag
ttttcagaaatcttgcagtttctgaatatacttaaaacaagtaattccatcaagctagtg
aatctgtgctctatatttatcagcacgtggctgacagcagctgggttcatacatttggtg
gagaactcaggggatccctgggaaaatttccaaaataatcaaccgctaacatactgggaa
tgtgtttatttgctgatggttacaatgtccactgttggctatggagatgtttatgcaaaa
acaacccttggtcgccttttcatggtcttcttcatccttgggggattggccatgtttgcc
agctacgtccctgaaatcatagagttaataggaaaccgcaagaaatatggtggttcctat
agtgcggttagtggaagaaagcacatagttgtctgtggtcacataacacttgaaagtgtg
tcgaacttcctgaaggacttcctgcacaaggatagggatgatgtcaatgtagaaatcgtc
tttctgcataatatctcccctaaccttgagctggaagctctttttaaacgacacttcact
caggtggaattttatcagggttcagtccttaatccccatgacctggcgagagtgaagata
gagtcagcagatgcgtgcctaatccttgccaataaatactgcgctgacccagatgctgaa
gatgcctccaatattatgagagttatttccataaagaattatcatccgaagataagaatt
atcactcagatgttgcagtaccacaataaggcccatctactaaatatcccaagctggaac
tggaaagagggagatgatgctatctgtcttgctgagctgaagctgggtttcatagcccag
agctgcctggcaccgggcctttccacaatgttagccaacctcttctctatgaggtcattc
ataaagattgaggaggatacgtggcagaaatactacctggaaggagttgcaaatgaaatg
tatacagaatatctgtctagtgcctttgtgggtttgtccttccctgcagtttgtgaactg
gtgtttgcgaagctgaagcttttgatgatagccatagagtacaagtcggagaagcgcgag
agcagtatattaatcaatcctggaaaccacgtcaagattcaagaaggtaccttaggattc
ttcattgcaagtgatgccaaagaagtaaaaagggcatatttttactgcaaggcctgtcat
gatgacatcacggatcccaaaaggataaaaaaatgtggctgcaaacggcccaagatgtcc
atctacaagagaatgagactggcatgttgttttgattgcggacgctctgagcgtgactgc
tcttgcatgtcaggcagtgtacatagtaacatggacacccttgagagagccttcccactt
tcttctgtctctgttaatgattgctccaccagtttacgtgcctttgaagatgagcagccg
tcgacactatcacccaaaaaaaagcagcgaaatggaggcatgcgaaattcgcccaactcc
tcacccaaactgatgagacatgaccccttgttaattcctggcaatgagcagattgacaat
atggatgccaacgtgaaaaaatacgactctacagggatgtttcattggtgtccagccaaa
gacatcgaaaaggtcattttgactcgaagtgaagcagcgatgacagttttaagtgggcat
gtagtcgtttgcatatttggggatgttaaatctgctttgattggattaagaaatttagtg
atgccattacgagccagcaactttcactaccatgaactcaagcacattgtgtttgtgggt
tcacttgaatacctgagaagggaatgggagacactgcataacttccccaaggtttcaatc
ttgcctggtacgccattaagtcgggctgatttaagggctgtcaacatcaacctctgcgac
atgtgcgttatcctgtcagccaatcagaataatattgatgatgcttcgctgcaggacaag
gaatgcatcttggcgtcactcaacatcaaatctatgcagtttgatgacagcattggggtc
ttgcaggctaattcccaaggctttacacctcctgggatggataggacatctccagacaat
agtccagtccatggccttttacgtcaaccctccattacaacaggagccaacatccctatt
ataacagagctagtaaatgattcaaatgttcagttcttggaccaagatgatgatgatgat
cccgacacagaactgtatctcacgcagccttttgcttgtggaaccgcatttgctgtcagc
gtgctggactctctcatgagcgcaacatacttcaatgacaatatcctcacactgatacgg
acattggtaacaggaggagccacaccagagctggaagcactgattgctgaggaaaatgca
ttgagaggaggttacagcacgccccagacacttgcaaacagggacaggtgtcgagttgct
cagttggctttgtatgatgggccttttgcagacctaggggacggaggttgttatggagat
ctgttttgtaaagcactgaaaacatacaatatgctttgctttggaatttatcgattaagg
gatgcacatttaagtactcccagccaatgcactaaacgttatgtaatcacaaacccacca
tatgaattcgagcttgtgccgacggacttgatcttctgtttgatgcaatttgaccacaac
gctggccagtcccgagccagcctttctcattcctcccattcctcctactcttccagcaag
aagagctcatcagttcactccatcccttcgacagccaaccgaccgaaccgcaccaagagc
agagattcccgggacaaacagaatgcaacaaggatgaatagaatgggccaagaaaagaaa
tggtttacagatgagccggataatgcctatcccagaaacattcaaatcaagcccatgagc
actcacatggccaatcagatcaatcaatacaaatcgacaagcagcttgataccaccaata
cgagaagttgaagatgaatgttga
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