Geospiza fortis (medium ground-finch): 102042476
Help
Entry
102042476 CDS
T03755
Symbol
DHX38
Name
(RefSeq) DEAH-box helicase 38
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102042476 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gfr03041
]
102042476 (DHX38)
Enzymes [BR:
gfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102042476 (DHX38)
Spliceosome [BR:
gfr03041
]
Complex C
Other components
Step II factors
102042476 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
Microtub_bd
PhoH
SRP54
AAA_16
AAA_30
AAA_7
Motif
Other DBs
NCBI-GeneID:
102042476
NCBI-ProteinID:
XP_005424906
UniProt:
A0A6I9HNC6
LinkDB
All DBs
Position
Un
AA seq
1190 aa
AA seq
DB search
MLAPGAGDLEPTRCARANEVEEAAGGKRSRVASYKDWEEGRDEVGSAEEEEEDEANRSDR
RARRNRHYRSVHVETPSYTGGVSEEFLERSRQRERERREHGVFASSKEEKERKKERSRDR
DHDRKRDREERDRSHHSRSERDGSSERSSRRSEPESPRHRPKDAATPSRSSWEEDDGGYS
SAHRSQWESPSPSPSYRDSERGHRLPSLRDTDRRERDRSVRGRYSDKTPLPTPSYKYNEW
ADDRKHLGATPRLSRGRGRRTEGEEGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFH
NPLAYSSEEYVKKREQHLHKQRQKRISAQRRQINEDNERWETNRMLTSGVVHRIEVDEDF
EEDNSAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQLVRKHREQ
KERKRAQHKHWELAGTKLGDIMGIKKEEEKDEMVTEDGKVDYKTEQKFAEHMKEKSEASS
EFAKKKSILEQRQYLPIFAVQQELLSILRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDY
GMIGCTQPRRVAAMSVAKRVSEEMGVRLGEEVGYAIRFEDCTSENTVIKYMTDGILLRES
LREADLDNYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLVVTSATMDADKFASFFG
NVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQVHLSGAPGDILVFMPGQEDIEVTS
EQIVEHLEELEKAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGI
MFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRAGRAGRTGPGHCFRLYTQSAYKNE
LLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTG
GLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLVVSMLSVPAIFYRPKGREEESDQV
REKFAVPESDHLTYLNVYLQWKNNSYSTLWCNQHFIHAKAMRKVREVRAQLKDIMVQQRM
SLASCGTDWDVVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYI
VYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEEVSAMEEEMA
LAEEQLRARREEQERRNPLGSARSTKIYTPGRKEQGEALTPRRTPARFGL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaccaggggcaggcgatctggagcccacgcgctgcgccagggcgaacgaggtg
gaggaggcggccggggggaagcgatcccgtgtcgcatcctataaggactgggaagagggc
cgtgacgaggtgggcagcgccgaggaagaggaagaggacgaggccaaccggagcgaccgc
agagctcgcaggaacagacattaccgctcagtccacgtggagacaccttcctacacaggg
ggtgtaagcgaggagttcttggagcgcagccggcagcgggagagggagcggcgggaacat
ggagtctttgcctcctccaaggaggagaaggagcggaagaaggaacgcagtagggatcgg
gaccacgatcgtaaacgagaccgtgaggagcgggacaggagtcatcacagcagatcagag
agggacggctcatcagagcggagcagcaggaggagtgaacctgagagcccccgacatcgg
cccaaagatgcagccacaccgtctcgctccagctgggaggaggatgatggtggctacagc
agtgcccatcgctcgcagtgggaatctccatctcccagcccttcctacagggactcagag
cgtggccaccggctgccatcgctgcgggacacggaccggcgggagcgggacaggtctgtg
aggggccgctactctgataagacaccgttgccaaccccatcatacaagtacaatgaatgg
gctgatgaccggaagcacctgggggccacgccacgcctgtcccgagggagagggcggcgc
acagaaggggaggagggcattgcctttgagacggaagaggagcggcagcagtgggaggac
gaccagcggcaagctgaccgggactggtacatgatggatgagggctacgatgagtttcac
aaccctctggcttactcctctgaggagtacgtgaagaagcgtgagcagcacttgcacaag
cagaggcagaagcggatctcggcacagcggcggcagatcaatgaggataatgagcgctgg
gagacaaatcgcatgctgaccagtggtgtggtccatcggattgaggtggatgaagatttt
gaggaggataactctgctaaagtgcatttgttggtgcacaatctagtgcctcctttccta
gatggaaggattgtcttcaccaagcagccagagccagtcatccctgtgaaggatgccacc
tcggatttggccatcatcgctcgaaaaggcagccagctggtgcgcaagcaccgggagcag
aaggagcgtaagagggctcagcacaagcactgggagctagcaggcaccaaactgggagac
attatggggatcaaaaaagaggaggagaaggacgagatggtgacagaagatggcaaagtg
gattacaaaacagagcagaagtttgctgaacacatgaaagaaaaaagtgaagccagcagc
gagtttgccaagaagaaatcgatcctggagcagagacaatacctacccatctttgctgta
cagcaggaactgctctccatcctcagagacaacagcatagtgatcgtggtgggggagaca
gggagtgggaagacaactcagctgacacagtatcttcatgaggacggctacactgattat
ggcatgatcggctgcacgcagccccgcagagtggctgccatgtccgtggccaagcgggtc
agcgaggagatgggggtgcgtcttggagaggaggtgggctatgccatccgctttgaggac
tgcacgtctgagaacacagtgatcaagtacatgacagatgggatcctgctccgtgagtcg
ctgcgggaggctgacctggacaactacagtgccatcatcatggacgaggcacacgagcgc
tcgctcaacactgatgtgctgtttgggctgctccgggaggtggttgcccgacgctcggat
ctgaagcttgttgttacttcagccaccatggatgcagacaagtttgcctccttctttggg
aacgttcccattttccacattcctgggcgaacttttcctgtggatattctttttagcaag
accccacaggaggattatgtggaggctgcagtgaaacaagccttgcaggtccacttgtct
ggtgctcctggagacatactcgtcttcatgcctggccaggaggatatcgaggtgacctca
gagcagattgtggagcaccttgaggagctggagaaggcacctgctcttgctgtactgcca
atctactctcagctgccctcggacttgcaggccaagatcttccagaaggctcctgatgga
gtcaggaagtgcatcgttgccactaacattgcagagacctcactgacagtggatggtatc
atgtttgtgattgactctggctactgcaaattgaaggttttcaacccccgtataggtatg
gatgcactgcagatctaccccatcagtcaggccaatgccaatcagagggctggccgagct
ggccggacaggcccaggccactgtttcaggctctacacccagagtgcctacaagaatgag
ctgctgacgaccacggtgccagagatccagcgcaccaaccttgccaatgtagtgctcttg
ctcaagtccctgggtgtgcaagacctgttgcagttccacttcatggatccgccccctgaa
gacaatatgctgaactccatgtaccagctgtggatcctgggggccctggataacacaggt
ggtctgacctctacagggcgcctcatggtggagttcccactggaccctgcactctccaaa
atgcttattgtctcctgtgacatgggttgcagctctgagatcttgcttgttgtctccatg
ttgtcggtgcctgccatcttttaccggcctaagggccgagaggaggagagtgaccaagtg
cgggagaaatttgctgttccagagagtgatcacttgacttacctgaatgtttacctgcag
tggaaaaacaacagctattctaccctgtggtgcaatcagcacttcatccatgctaaggcc
atgcggaaggtgcgggaggtgcgtgcccagctcaaggacattatggtgcagcagcgcatg
agcctggcatcctgtggtacagactgggatgttgtcaggaagtgcatctgtgctgcatat
ttccatcaggctgcaaagctgaagggcattggggagtatgtgaacatccgcacaggcatg
ccctgccacctgcaccccacgagctctctgtttggcatgggctacacaccagactacatt
gtgtaccatgaattggttatgactaccaaggagtacatgcagtgtgtcactgctgtggat
ggtgagtggctggcagagctgggccctatgttctacagtatcaaacatgctggcaagtca
cgccaggagaaccggcgccgtgccaaggaggaggtgtctgccatggaggaggaaatggct
ttggcagaggagcagctgcgtgcccgccgggaggagcaggagcgccgtaacccgctgggc
agtgcaagatctactaaaatctatacccctgggcgaaaggagcagggggaggccctgacg
ccacgacgcaccccagcccgctttggtctctaa
DBGET
integrated database retrieval system
