Geospiza fortis (medium ground-finch): 102044501
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Entry
102044501 CDS
T03755
Gene name
AFDN, MLLT4
Definition
(RefSeq) afadin, adherens junction formation factor
KO
K05702
afadin
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04520
Adherens junction
gfr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
102044501 (AFDN)
04530 Tight junction
102044501 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RA
DIL
PDZ
PDZ_6
FHA
PDZ_2
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
102044501
NCBI-ProteinID:
XP_005416333
LinkDB
All DBs
Position
Un
AA seq
1784 aa
AA seq
DB search
MRFYFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEE
RRLDVDEKPLVVQLNWNKDDREGRFVLKNENDTLPPKKAQSNGPEKQEKEGVIQNFKRTL
SKKEKKEKKRREKEALRQASDKDDRLLHGDDIENFRLAAEVYKDMPETSFTRTISNPEVV
MKRRRQQKLEKRMQEFRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVIEA
LEKYGLEKENPKDYCIARVMLPPGAQHSDDKGAKETILDDDECPLQIFREWPSDKGILVF
QLKRRPPDYVPKKTRKIADGKPLKGKERVDGSGYGSCLPPEKLPYLVELSPGRRNHFAYY
NYHTYEDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTV
TPRSIDAETYVEGQRISETTMLQSGMKVQFGSSHVFKFVDPTQDHIISKRSTDASLMVKG
PRHKTGAVQETTFDLEGDIHSGTALPASKSTSRLDGDRASSASSTAERGMVKPMIRIDQQ
DYRRQDSRSQDTHGPELILPASIEFRESSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTC
RYVLSSQYRPDITPAERTHKVIAIVNKMVNMMEGVIQKQKNIAGALAFWMANASELLNFI
KQDRDLSRITVDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENNPQRPKIDDV
LHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTAPDSGLCSHYWGAIMRQQ
LGHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSHADVPNINSTCFKLNSLQLQALL
QNYHCAPDEPLIPTELIENVVTVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSC
DVVRNVPSGLQEFLDPLCQRGFCRLIPHPRSPGTWTIYFEGADYESHLSHENAELAQPLR
KEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVD
GRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQRVSDRRGSGKP
RPKSEGFELYNNSTQNGSPESPQLPWTEYSEPKKLPGDDRLMKNRADHRSSPNVANQPPS
PGGKNAYASGTTTKITSVSTGNLCTEEQILPPRPEAYPIPTQTYTREYFTFPASKSQDRM
GPAQSQWPSYEEKPQLQAESNHSINTTMQRVARSQEELRDKVFQPERNRLEVVIRKDVEY
IDRKSDSDQWMNSSVDSSTSSQEHLNHSSKPVSPGSCLTKSGPGRWKTPATSQPTPVAIS
QPIRTDLPPPPPPPPVHYAAEFDELQMDLPLPPPPPPNQIGAQASSQVAAAERKKREEHQ
RWYEKEKARLEEERERKRREQERKLGQMRSQPLIPAQPVVPPVSLQQVKSEKPSTLQRPQ
ETVIRELQPQQQPRTIERRDLQYITISKEELSSGDSLSPDPWKRDAKEKLEKQQQMHIVD
MLSKEIQDLQNKPDRTAEENDRLRKLMLEWQFQKRLQESKQKDEDDDEEEDDEVDTMLIM
QRLEAERRARDEERRRQQQLEEMRKREAEDRARQEEERRQQEEERTRREAEEKRRQEEEY
YSRLEAERRRQHDEAERRLLEPDEPGLYRPPLPREYELPSPTPSSNAPPPPPQRNTSYLK
TQVLSPDTIYTAKFVAYNDDDDEEEDSNLAGINSYTGSTGAAAGEVYQDPRDKRSKSQDA
DLPGAPENLTFRERQRLFSQGQDVSNKVKASRKLMELENELNTK
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgagattctactttcaagacaaagcagctggaaattttgcaacaaaatgtatccgtgtc
tctagtactgccacaactcaagatgtcatagaaactcttgcagagaagtttcgaccagac
atgcgaatgttgtcatcccctaaatactcactttatgaagtacatgtcagtggagaagaa
agaagattagatgtggatgagaagcctcttgttgtacagttaaactggaacaaagatgat
cgcgagggaaggtttgtcctcaagaatgaaaatgatacacttcctccaaagaaagctcag
agtaatgggcctgaaaaacaagaaaaagagggagtaattcagaatttcaagcgaactctc
tcaaaaaaagaaaaaaaggaaaaaaagaggcgtgaaaaagaggcattgcgacaagcgtca
gataaagatgatagacttcttcatggggatgatattgagaattttcgccttgcagctgag
gtttacaaagatatgcctgagaccagcttcactcgcacaatatccaatcctgaggtggtt
atgaaacggcgacgacagcaaaaactagagaagagaatgcaggagtttcgcagttctgat
ggcagaccagactcaggtgggacgctgagaatttatgcagacagtttaaaaccaaatata
ccgtacaagacaatcctgctgtctactacagatactgcagactttgcagttattgaagca
ctggaaaaatatggcctggaaaaagaaaatcccaaggattattgtattgctcgtgtcatg
ctgcctcctggtgctcagcattctgatgataaaggtgctaaagaaactattcttgatgat
gatgagtgtccactgcagatatttagggagtggcctagtgataaaggaatactggtcttt
cagttgaaaaggcggcctcctgattatgtcccaaagaaaaccaggaagatagctgatgga
aaaccattgaaggggaaggaaagagttgacgggtctggctatggctcttgccttcctcct
gagaaactaccatacctggtagaattaagcccagggagaaggaatcactttgcctactac
aactatcacacttacgaagatggttctgactccagagataagccaaagctctatcgtcta
caattaagtgtcactgaagttggaactgaaaaatttgatgacaattccattcagttattt
ggtccaggaattcagcctcatcactgtgacctcactaatatggatggagttgtcactgta
accccgagaagcattgatgctgaaacctatgtggaaggtcagcgtatttcagaaaccacc
atgttgcaaagtggaatgaaggttcaatttgggtcttctcatgtatttaagtttgtggat
cctactcaggaccatattatttccaaaagatctactgatgcaagtcttatggtcaaaggt
ccaagacacaaaactggagctgtccaggaaaccacatttgatctggagggagatattcac
agtggaacagcattaccagcaagcaagagcaccagcaggctggacggtgacagggcatca
tccgcatccagcacagccgagcgaggaatggtgaagccaatgattaggatagaccagcag
gattaccgccgacaggacagcagatctcaggatacccatggaccagaactgatactgcct
gccagtattgaattcagggaaagctctgaagatgccttcttatctgccattataaattac
acaaatagctcgacagttcattttaagctgtcaccaacatatgttttgtatatgacatgt
cggtatgtattgtccagccaatacagacctgacatcactcctgctgagcgtactcacaaa
gtcattgcaatagtcaacaagatggtgaacatgatggaaggagtgatacagaaacagaag
aatattgctggggcccttgccttttggatggcaaatgcatctgaactactcaatttcata
aagcaagacagagatcttagccgaattactgtggatgcacaagatgttttggcacacttg
gttcaaatggcattcaagtacctggttcattgtctgcagtcagagcttaataactacatg
ccagcattcctggatgatccagaggaaaataatcctcagaggcctaaaatagatgatgtg
ctgcataccttgactggagccatgtccctgttgcgacgatgcagagtaaatgctgctctg
accatacagctcttctcccagctctttcattttatcaacatgtggctttttaacagatta
gttacagccccagattcagggttatgttcacattactggggagctatcatgcgccaacag
cttggccacattgaggcctgggcagaaaaacagggtttggaattggctgctgattgccac
ctgagcagaatagtacaggcaaccacattgcttaccatggacaaatactcacatgcggat
gttccaaatattaacagtacttgctttaagctgaattctctgcagctacaagccttgttg
cagaattatcactgtgctccagatgaaccactcatcccaacagaattgatagagaatgta
gtaactgttgcagaaaatacagctgatgaacttgctcgcagtgatggccgagaagtccag
ctggaagaggatcctgacttacagctaccttttctcttaccagaagatggctattcctgt
gatgttgtcagaaatgttccaagtggtttacaagaatttttagatccactctgtcaaaga
ggcttttgtagactaatacctcatccacggtcaccaggcacatggacaatatactttgaa
ggtgcagattacgaaagtcacctgtcccatgagaatgctgagctggctcagcctttgaga
aaagaacctgaaattatcactgtaacactaaaaaaacaaaatggaatgggactgagcatt
gttgctgccaagggtgctggtcaagacaaacttggaatatatgtcaagtctgttgtgaaa
ggaggtgctgcagatgtggatggtcgtctggctgcaggggatcagttgcttagtgtggat
ggtcgaagtttggtgggcctgtcccaggagagggcagcagaacttatgactaggacaggt
tctgtagtaacactagaagtagcaaaacaaggagcaatttaccatggcctggcaaccctg
cttaatcagccatccccaatgatgcaaagagtttctgaccgccgtggctcaggtaaacct
cgaccaaagagtgaaggttttgagctgtataacaattccacgcaaaatggatcacctgag
agtccccagctgccctggacggagtacagtgagccaaagaagctgccaggggatgacaga
ttgatgaagaacagggcggatcatcgttccagtcccaatgtagcaaatcagcctccaagc
cctgggggaaagaatgcttatgcatctggaactaccaccaaaataacctcagtctctact
ggaaatctttgtacagaggaacagattctgccaccacgacctgaagcttatcccatccca
acacagacctatactagagaatatttcacattcccagcttcaaagtcgcaggatcgaatg
ggtccagctcagagtcagtggccaagttatgaagaaaaaccacagcttcaagcagaaagt
aatcattctatcaatactaccatgcagcgtgtagctcgttcccaagaagagctcagagac
aaagttttccagccagagaggaatcgtttggaagttgttatacgcaaggatgtggagtac
attgatcggaagtcagacagcgatcagtggatgaattcatctgtggattctagcacatct
agccaggaacacctgaaccattcctccaaaccagtgtcacctggttcttgtctaactaaa
agtggacctggccgttggaaaactccagccactagccagccgactccagtggccatttcc
cagcccatcagaacagatcttccccctccaccaccacctcctccagtgcattatgctgct
gaatttgatgaactacaaatggatttgcctctgcctccacctcctcctccaaatcagata
ggagcacaagcatcctcccaggtagctgctgctgagcgtaaaaaaagagaagagcatcag
aggtggtatgaaaaggaaaaggcacgtttggaagaagaacgagaaaggaaacgtcgtgag
caggaaagaaaactgggccaaatgcgttctcagccactaattcctgctcagcctgtggtt
cctcctgtctcccttcaacaagtgaaatcagaaaagccctcaactttgcagaggcctcaa
gaaacagttattcgagagctgcagccccaacagcagccgcggactattgagcggagagac
ctgcagtacattaccatcagcaaggaagaactgtcctctggtgatagcctctctccagat
ccatggaaacgggatgcaaaggagaagctggagaagcagcaacagatgcacatcgtggac
atgctgagtaaagagattcaggaccttcagaacaaacctgatcgtacagcggaagaaaac
gaccgcctccgcaaactcatgcttgagtggcagttccaaaagcgactgcaagaatcaaag
caaaaggatgaagatgacgatgaagaggaggatgatgaggtggatactatgctcatcatg
cagcgactggaggcagaaagaagagcaagggatgaagaacgcagacggcagcaacaattg
gaagaaatgcgtaaacgagaagcagaagacagagccaggcaggaagaagagcgcagacag
caagaggaggagcggaccaggagagaggctgaagaaaagaggcgccaggaagaggagtat
tacagtcgcttagaggctgaaaggcgcaggcagcacgatgaagctgagcgaagattgctg
gaacctgacgagcctggtctgtacagacctccgcttccacgggaatatgaactcccatcc
ccaaccccttcatctaacgctcctcctcccccacctcagcgaaacacctcttacctcaaa
acacaggtcctctcccctgacacgatttatactgccaagtttgttgcttacaatgatgat
gatgatgaggaggaggattccaatctagcaggaataaattcatacactggatctacagga
gcagctgctggggaagtttatcaggatccaagagacaaaagatctaaaagtcaagatgcc
gatttacctggagcaccagaaaacctgacgttcagggaacgccagcgacttttttcacag
ggtcaggatgtatccaataaagtaaaagcttctaggaaactaatggaactggaaaatgag
ttgaacacaaaataa
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integrated database retrieval system
