KEGG   Gallus gallus (chicken): 418764Help
Entry
418764            CDS       T01006                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
gga  Gallus gallus (chicken)
Pathway
gga03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    418764 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gga03400]
    418764 (LIG4)
Enzymes [BR:gga01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     418764 (LIG4)
DNA repair and recombination proteins [BR:gga03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     418764 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme SKA1 DUF2922 APG17
Motif
Other DBs
NCBI-GeneID: 418764
NCBI-ProteinID: NP_001025987
CGNC: 12647
Ensembl: ENSGALG00000016854
UniProt: Q90YB1
LinkDB All DBs
Position
1
AA seq 912 aa AA seqDB search
MASAPVLQPSPKRTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHSALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAVKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKRGRLTVEQVNELLDAIANNNAAKNKGLVKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPVDGSLTPFIHNVFKSDIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMINDQKLAHESLSKRYKILSNVFTPLTGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLEHLRSRAEGKLASKHLYIDEYDEPQEKKRRTVPKVKKVIGIAEQFKAPDLSNVNKV
SSMFEDVEFCVMTGMGRYSKSELESRIAECGGSVVQNPGPDTYCVIVGAENVRVKNIIAS
NKYDVVKAEWLLQCFQSKMLVPWQPAFMIHMSPETREHFAREYDCYGDSYTADTDVAQLK
EVFSRVKDNKKMPLDLIAELEERYSWNSCKLCIFRGNTIYVDYYAIINKPSTKIHGTRLS
IRALELRFYGAKVVPLLEEGVSHVVIGEDHSRVKEMKALRRMFGKKFKIVSELWVTESVK
EGVPKNETQFLI
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttccgcacctgtgttacagccttctcctaaaagaacagtggcctcgcatgtgcct
tttgcagacctgtgttccaccctggagcgaatacagacgtgtaaatcccggccagagaaa
accaagtacttcaaggacttcttggattcctggaggaaattccacagtgctctccatcaa
aaagagaaagatgtcaccgattctttctatcctgctatgcggcttattcttccgcagctg
gaaagggaaaggatggcgtatggaattaaggaaaccatgcttgcaaagctttacattgag
cttcttaatttaccaaaagatggaaaggatgctgtgaagcttttaaattacagaacgccc
actggctcacgtggagatgctggagactttgcgatgatcgcatactttgtgttaaaaccc
cgaagccctaagcgaggcaggttgactgtagagcaggtcaatgaactgctggatgccatt
gcaaacaacaatgctgctaaaaacaagggactggtaaagaaaagccttcttcagttaatt
acccaaagcacagcactcgagcaaaagtggctcatccggatgattataaaggatctaaaa
cttggtgttagtcaacaaacgatattttcaatttttcatcctgatgctgctgaattacac
aatgtcacaacagatttggaaaaagtttgtaggcagctgcacgacccctctgtctcgctt
agtgatgtttctatcatgttattttctgcctttaaaccaatgctcgctgctattgctgat
gtacaacaaattgagaagcagatgaataaccaggtattctacatagaaactaaactggat
ggtgaacgtatgcagatgcacaaagatggtgatgtgtataaatatttttccagaaacgga
tttgactatactcagcagttcggtgcttcccctgttgatggctcattaacaccatttatt
cataatgtatttaaaagcgacatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaaacacaaacctttatgcaaaaaggaaacaaatttgacatcaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtgtttgatgtattaatgataaatgatcag
aagttggctcatgaatccctgagcaaaagatacaagatcttaagtaatgtatttacccca
ttaacaggcaggatacacgttgtacataaaaaaagtgccaggacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtaaaagacccaatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatgggctgatggatgagctagatcttcttattgttggtggctactggggaaaaggctca
cgtggtggaatgatgtctcactttctgtgtgctgttgcagagactccagctccaaatgaa
aaacctactgttttccactctatttgtcgtgttggctctggctacactatgaaggaatta
tatgatctgggtttgaaactagctaaacactggaagccttacaataggaaggaccctcct
tgtaacattctgtgtggcactgaaaaacctgaaatgtacattgagccttgcaactctgtc
atagttcagatcaaggcagctgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgaaaaaataagagaggacaaagaatggtatgaatgcatgact
ttggacatgctagaacatcttagaagcagagcagaagggaagctggcatccaagcaccta
tatattgatgaatatgatgagccacaagagaagaaaaggagaactgtaccaaaggtgaag
aaagtaattggaatagctgagcagtttaaagctcctgatctttctaatgtcaacaaagtt
tccagcatgtttgaggatgtagaattttgtgttatgacaggaatgggaaggtactccaag
tctgaactggaaagcagaatagctgaatgtggtggcagtgtggtacagaaccctggacct
gacacttactgtgtcattgtaggagctgagaatgtcagagttaaaaacatcattgcttcc
aacaaatatgatgtggtaaaagcggagtggctgcttcagtgttttcagtccaaaatgctg
gtaccttggcagccagcctttatgattcacatgtctcctgaaacaagagaacattttgct
cgtgagtatgactgctatggagacagctacacagcagatacagatgttgcacaactcaag
gaagtgttctcaagagtgaaggataataagaagatgcctttggatttgattgctgagtta
gaagaacggtattcatggaacagctgtaaattgtgtatattcaggggaaacactatttat
gtggactattatgctattattaacaaacccagtaccaaaatccatggcacaagactatca
attagagctttagagctccgtttctacggtgcaaaagtagttcctcttcttgaggaaggt
gtgtcccatgttgttataggagaagatcattctcgggtaaaagagatgaaagctctcagg
agaatgtttgggaaaaaatttaaaattgtatctgagctatgggtaacagagtcagttaag
gaaggagtcccaaagaatgaaactcagttcttaatttaa

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