Gossypium hirsutum (upland cotton): 107891713
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Entry
107891713 CDS
T04793
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107891713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107891713
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
107891713
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
107891713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
107891713
NCBI-ProteinID:
XP_040956398
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All DBs
Position
D09:35504258..35509100
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AA seq
731 aa
AA seq
DB search
MVSSEGLCGSQPPIAAPVTQYGVTEPISMAGPTAADIQRSRDLEKFLVQAGLYESKEEAS
KREEVLGQIQEIVTNWVKQLTRLRGYTDQMVEDAKAVIFTFGSYRLGVHGPGSDIDALCV
GPSYVSREEDFFFVLHNILAEREEVTELQPVPDAHVPVLRFKFSGIPIDLLYASISHLVV
PHDLDISDISVLYNVDEPTVRSLNGCRVADQILKLVPNVEHFRTTLRCLKFWAKRRGVYS
NVTGFLGGVNWALLVARICQLYPNAAPSMLVSRFFRVFTQWRWPNPVMLCAIEEDRLGFS
VWDPRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNNVCENIELNKAKW
SALFEPYLFFQSYTNYLQVDILAADADDLRSWKGWVESRLRQLTLMIERDTYGKLQCHPY
AQDYVDASKPCAHCAFFMGLQRKHGEIVQEGQQFDIRGSVDEFRHSISMYMFWKPGMEIY
VSHVRRKQLPAYVYPDGCKRSRNLHLTPQQPSYKISRNNGVAYQAESGEKCLKRKKDPDG
ENSEQSRLDKRRSPDRNQSVSPEIVSRKLGSACTGCSTSDLDEMNRLAEANTSSNSSGIS
SCSHEDIGNESTAGSSEGSNVGDNNPSSSQSDSSDELKSSVEDEHADQNKVFQDGLPKDL
EPKTVVGVVLKSMNGVVDSESVQNPVIRFVFEILIDFFFCVPCAMFFFILLSFGVSFVVA
LYNRLSLASTA
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggtgagttcagagggattatgtggttcgcagccgccgatagcagcgccagtgacgcag
tatggtgtgacagagccgatttccatggcgggccccaccgcagccgacatacaaagaagt
cgtgatttggaaaagtttttggtgcaagctgggctatatgagagtaaagaggaagcatca
aagagagaagaagttcttggtcaaattcaagagattgtgacaaattgggttaagcaactt
actcgtttgaggggttacactgatcagatggttgaggatgcaaaggcagtcatttttact
tttggttcttatcgacttggggttcatggacctggatctgacatagacgctctatgtgtg
ggaccatcttatgtgagccgagaggaagatttcttctttgtactgcacaacatcctggca
gaaagggaagaagttacagagttacaaccagttccggatgctcatgtccctgtattgaga
ttcaagtttagtggaataccaattgatcttctttatgcaagcatctctcatttggttgtc
cctcatgatctggacatctcggacatttcagtactgtacaatgttgatgagcctactgtt
cgaagtcttaatggctgcagggttgcagatcaaattctgaaactggtgccgaatgttgag
cattttcgcacaacactccgatgtctgaagttttgggctaaaaggcgtggtgtttattcc
aatgtgactggatttctcgggggtgttaactgggcgcttcttgtagctcgaatttgccaa
ctttatcctaatgcagctccaagtatgcttgtttcacgattttttagggtctttacccag
tggcgatggccaaacccagttatgctttgtgcaattgaagaagatagactcggattttct
gtttgggatcctcgtaaaaaccctcgtgataggactcatcatatgccaattatcacacct
gcctatccatgcatgaattctagttataatgtgtctacaagtacgcttcgagtcatgatg
gagcagttccaatatggtaacaacgtgtgtgagaatattgagctgaataaagcaaagtgg
agtgctttgtttgagccttacttgttcttccaaagctacaccaactatctgcaggtggac
attcttgcagctgatgctgatgacttacgttcttggaaaggctgggtggaatcccgtctg
aggcagctgactttgatgattgagcgagacacttatggaaagttgcagtgccatccttat
gctcaggattatgtagatgcctccaagccatgtgcccattgtgcattttttatgggttta
caaaggaaacatggagaaatagttcaagaaggtcaacagtttgatattcgtgggtcagtt
gatgagttccgccattcaataagtatgtacatgttttggaagcctgggatggaaatctat
gtatcccatgtccgtagaaagcagcttccggcttatgtttacccagatggctgtaaacgt
tctcggaatctacaccttactccccagcagccttcttacaaaatatctcgcaacaatggt
gttgcatatcaagctgaatctggtgagaaatgccttaaaaggaagaaggatcccgatgga
gaaaatagtgagcaaagtaggctggataaacggaggagtcctgataggaatcaatcagtt
tctcccgagattgttagtcgcaagcttggcagcgcttgcacaggttgttctacatcagat
ctagatgaaatgaatagattagctgaagccaatacatcatcaaattcgagtggtatcagc
tcttgttcacatgaggatattgggaatgaatctacagcaggtagtagtgaagggagcaat
gtaggtgacaataacccatcgtcttctcagagtgattccagtgacgaactaaaatcttct
gtggaggacgaacatgctgatcagaacaaagtgttccaagatggattgccgaaagattta
gagccaaaaactgtggttggcgtggttcttaagtccatgaacggagttgttgattcagaa
tctgtgcagaatcctgtgataaggtttgtattcgaaatcttaatagacttctttttttgt
gttccatgtgcaatgtttttctttatactgctttcttttggtgtttcttttgttgttgct
ttgtataacaggttgagtttggcatcaacagcatga
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