KEGG   Gossypium hirsutum (upland cotton): 107897564
Entry
107897564         CDS       T04793                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
  KO
K14962  COMPASS component SWD2
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107897564
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107897564
   03036 Chromosome and associated proteins [BR:ghi03036]
    107897564
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     107897564
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     107897564
    COMPASS/SET1 complex (yeast)
     107897564
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 PQQ_3 NBCH_WD40
Other DBs
NCBI-GeneID: 107897564
NCBI-ProteinID: XP_016678541
UniProt: A0A1U8IKC1
LinkDB
Position
A10:21574418..21578446
AA seq 343 aa
MATKMSLTELDDEIVRSMSIGAVFSDFGGKINSLDFHRKDDLLVTASEDDSVRLYDIANA
KLIKTTYHKKHGADRICFTHHPSSVICSSRHNLESTGEALRYLSMYDNRCLRYFKGHKER
VVSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGG
AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC
GFSLEPSPNTTIEATITPDGEYVISGSGDGTLHAWNINMRNEVAAWNSHIGVTACLKWAP
RRAMFVAASTVLTFWIPNNCSKPAAETGSTDAQAGLQFEQVGQ
NT seq 1032 nt   +upstreamnt  +downstreamnt
atggcgacgaagatgtcacttactgagcttgacgacgaaatagtgcgcagcatgtcgatt
ggcgcagttttctcagacttcggaggaaaaataaattcacttgactttcatcgaaaagat
gatctattggtgactgccagtgaggacgattcggttcgcctttacgacattgccaatgct
aagttgataaagacaacatatcataagaaacatggtgcggatcgaatatgtttcacacat
caccctagttctgttatatgctcttcgagacacaatttggaatcgaccggagaagccttg
cgatatctttcaatgtatgataaccgatgccttcgctacttcaaaggacataaagagaga
gttgtttccctctgcatgtctccggtaaatgatagcttcatgtcaggttctcttgaccat
agtgtgaggatttgggatctccgtgtaaatgcctgtcagggaattttacgcctacgtggt
agaccaactgtagcatatgaccaacaaggccttgtctttgctgtggctatggaagggggt
gccattaaattgtttgattcacgctcctatgacaaggggccgtttgatacatttttagtt
ggtggagacacagctgaggtttgtgatatcaaattcagcaatgatggcaaatcaatgcta
ttgacaaccacaaataacaacatatatgttcttgatgcatatggaggagagaagcgatgt
gggttcagtttagaaccatctccaaatacaactatagaggcaaccattactcccgatggt
gagtatgtgatctcagggtcaggggatggaaccttgcatgcctggaacatcaacatgcga
aatgaggtagccgcttggaacagccacataggtgttacagcttgcttgaagtgggctcct
cgtagggccatgttcgttgctgcatcaaccgttcttacattttggatacctaacaactgt
tcaaaaccagctgcagagaccggttccactgatgcacaagccgggctgcaatttgagcaa
gtcggtcaataa

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