Gossypium hirsutum (upland cotton): 107897564
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Entry
107897564 CDS
T04793
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1 isoform X1
KO
K14962
COMPASS component SWD2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107897564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107897564
03036 Chromosome and associated proteins [BR:
ghi03036
]
107897564
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107897564
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
107897564
COMPASS/SET1 complex (yeast)
107897564
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
PQQ_3
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
107897564
NCBI-ProteinID:
XP_016678541
UniProt:
A0A1U8IKC1
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Position
A10:21574418..21578446
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AA seq
343 aa
AA seq
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MATKMSLTELDDEIVRSMSIGAVFSDFGGKINSLDFHRKDDLLVTASEDDSVRLYDIANA
KLIKTTYHKKHGADRICFTHHPSSVICSSRHNLESTGEALRYLSMYDNRCLRYFKGHKER
VVSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGG
AIKLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRC
GFSLEPSPNTTIEATITPDGEYVISGSGDGTLHAWNINMRNEVAAWNSHIGVTACLKWAP
RRAMFVAASTVLTFWIPNNCSKPAAETGSTDAQAGLQFEQVGQ
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaagatgtcacttactgagcttgacgacgaaatagtgcgcagcatgtcgatt
ggcgcagttttctcagacttcggaggaaaaataaattcacttgactttcatcgaaaagat
gatctattggtgactgccagtgaggacgattcggttcgcctttacgacattgccaatgct
aagttgataaagacaacatatcataagaaacatggtgcggatcgaatatgtttcacacat
caccctagttctgttatatgctcttcgagacacaatttggaatcgaccggagaagccttg
cgatatctttcaatgtatgataaccgatgccttcgctacttcaaaggacataaagagaga
gttgtttccctctgcatgtctccggtaaatgatagcttcatgtcaggttctcttgaccat
agtgtgaggatttgggatctccgtgtaaatgcctgtcagggaattttacgcctacgtggt
agaccaactgtagcatatgaccaacaaggccttgtctttgctgtggctatggaagggggt
gccattaaattgtttgattcacgctcctatgacaaggggccgtttgatacatttttagtt
ggtggagacacagctgaggtttgtgatatcaaattcagcaatgatggcaaatcaatgcta
ttgacaaccacaaataacaacatatatgttcttgatgcatatggaggagagaagcgatgt
gggttcagtttagaaccatctccaaatacaactatagaggcaaccattactcccgatggt
gagtatgtgatctcagggtcaggggatggaaccttgcatgcctggaacatcaacatgcga
aatgaggtagccgcttggaacagccacataggtgttacagcttgcttgaagtgggctcct
cgtagggccatgttcgttgctgcatcaaccgttcttacattttggatacctaacaactgt
tcaaaaccagctgcagagaccggttccactgatgcacaagccgggctgcaatttgagcaa
gtcggtcaataa
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