Gossypium hirsutum (upland cotton): 107897918
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Entry
107897918 CDS
T04793
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107897918
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107897918
03041 Spliceosome [BR:
ghi03041
]
107897918
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107897918
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107897918
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107897918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
Nup35_RRM
zf_CCCH_4
PHM7_cyt
Prefoldin_2
zf-CCCH
APG6_N
Motif
Other DBs
NCBI-GeneID:
107897918
NCBI-ProteinID:
XP_016679011
UniProt:
A0A1U8ILP5
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All DBs
Position
A05:complement(99013925..99020837)
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AA seq
940 aa
AA seq
DB search
MELKVSSPKLGGLSPPGCISDPEEKEVSDEDDDDRNHKHRRRETRSQSLEADSMDPAFTK
SYRKRNKFFENGQPFRENESQAGETWKSNNSLPLDKDLTSKFDRRRPGLVSLPRGHVDVN
QRVRSNQPFSGDSGPGRGRGRDNSSWNQRDSRFNSIDIASQMVHPGSVAPSLFAGRGLPN
VSNAQSPSWGAFGMMPGIPNGGLDTLYPIGLPGVLRPPMNSSLNMGIPRQRCRDFEERGF
CLRGDMCPMEHGVNRIVIEDVQSLSQFNLPVTVPSAQLLATPAAPRPVPSSVPPTTLMNS
KGIHSKSSKSGMTDDALGLNGAYAGSTSASVADLYDPDQPLWNNNGPEASTAVSGLHSPK
IDEAEPFVSGDISDRHHGRLHDNADNELASRSIGSQGTSLSVWGRIGSPGSRTDTKEKID
LAQSAYPENETKEDQEAFPSSQGTSCQVKRISTEDDGSKFMDTSFKSQTDSMHNSRKPTQ
KALRTLFVNGIPLKSNKREALLSHFRKFGEVIDIYIPKNSERAFVQFSRREEAEAALKAP
DAVMGNRFIKLWWANRDSVPDDGINSGSSVTVTSRGPTVFVIPAQPVVNRGGKDNLQPIA
QKSNAVHGAAVPSVNSPKPSGVNGPKVQLPLQKKLETLEQMKEELRKKQETLEQKRNDFR
RQLDKLQKQSSGVKGDLPTEQAAKKQKVGIAADPAKASTPSLSEPGAPTTIPCTVGMTDK
NKSTENVGSHGPTSNATMSLQESKSSKQQSRPSAPTGYPFLMNKYKLDNRPTAFRVIPPL
PSGFADVDVLKEHFLQYGDLSAVEIEDVENDNDMGSEAMNNCSIVITYGTRRSAERAYVN
GKCWQGNNLQFTWLKSSNSSNDPSSKETSSSTPKGTLEAGVQTEGELECSVSLEVIASGD
KESKNSEGESFVENMALPEVSEHSSSPSSCMKESPKGDAC
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcatctcctaagcttggtggtctttctcctcctggttgtattagc
gatcctgaggaaaaggaagtcagtgatgaggatgatgatgatcgcaaccataagcaccgt
aggcgagagacacgttctcaatcattagaggcagattctatggatccggcttttacaaag
tcatacagaaaacgcaataaattttttgaaaatgggcaacctttcagagaaaatgaatct
caagcaggtgaaacctggaaaagtaataacagtttgcctctagacaaagacttgacatcg
aagtttgatagaagacgccctggattagtttcactaccccgaggacatgtggatgtgaac
cagagagttaggtcaaaccaaccatttagtggagattctggtcctggtaggggtagagga
agggataactcttcttggaatcaacgtgattctaggttcaattcaattgatattgcttct
caaatggttcatcctggatctgttgctccaagtctctttgcaggaaggggattgcctaat
gtttcaaatgcgcaaagcccatcatggggtgcctttgggatgatgcctggaataccaaat
ggtggcctagatacactctatcctattggtttaccaggggtgctgaggccacctatgaat
tcttcattgaatatgggcattcctcgccaacgttgcagagactttgaagagcgtggattt
tgtctaagaggagacatgtgcccaatggagcatggtgtcaatcgtattgttattgaagat
gttcagagtctgtcacagtttaaccttcctgttacagttccaagtgcacaactattggca
acacctgctgcacctagacctgtaccttcaagtgttcctccaaccactttgatgaacagc
aagggtatacatagcaaaagtagcaagtctggaatgactgatgatgccttgggtttgaat
ggtgcatacgctggctctactagtgcaagtgttgctgatctatatgatcctgatcaaccc
ttgtggaataacaatggcccagaagcatcaactgcagtctcaggactacattcacccaag
attgatgaagcagaaccctttgtaagtggtgatatctctgatcgccatcatggaaggtta
catgataacgctgataatgaattggcaagtagaagcattgggtcacagggcacaagtttg
tctgtttggggtagaattggtagcccaggaagtagaacagacacaaaagagaaaattgat
ctcgcacagtccgcctatcctgagaatgaaaccaaagaagaccaagaagcgtttcccagc
tctcaaggcacttcctgtcaggtaaagcggatcagcactgaggatgatggctccaaattt
atggatacatcattcaaatcgcagactgatagtatgcataatagccgaaaaccaactcag
aaggcacttcgtacactgtttgtcaacgggattcccctgaaaagtaacaaaagagaggct
cttctttctcattttcgtaagtttggagaggttattgacatttatattccgaaaaatagt
gaacgggcctttgtccagttttcaaggagggaagaggctgaagctgctctgaaggctcct
gatgctgttatgggtaatcgctttattaagctctggtgggctaatcgggatagtgtacct
gatgatggcataaacagtggaagcagtgtaacagtaacttcacgcggtccaacggttttt
gttattccagcgcagcctgttgttaatagaggagggaaggataaccttcaacctattgct
cagaagagcaatgctgtccacggtgctgctgtaccttctgtgaattcccctaaaccatct
ggtgttaatggtcccaaggttcaacttccattgcagaaaaagttagaaactctagagcag
atgaaagaggaactacgcaagaagcaggaaacgctggagcagaagcggaatgacttcagg
cgccagttggacaaacttcaaaaacaatcttctggtgtcaaaggtgatctaccaactgag
caagctgctaagaagcaaaaggtgggaattgcagctgatcctgcaaaagcttcaactcca
agtttgtctgaacctggtgcacctacaacaataccatgcactgtagggatgacagataaa
aacaaatcaacagagaatgttgggtctcatggtccaacatcaaatgccactatgtcattg
caggagtctaagagctcaaagcagcaatctcgtccatcagcacctactgggtatccattc
ttgatgaataaatacaaattagacaaccggcctactgcttttagagttattccacctttg
ccttctggttttgcagatgttgatgttctgaaggagcacttcttacaatatggtgatctt
tctgccgtggagatagaagatgtggaaaatgataatgatatgggatcagaagcaatgaat
aattgctccattgttataacttatggcacacgccggtcagctgaaagggcatacgtaaat
ggtaaatgctggcagggcaataatttgcaatttacatggttgaaatctagcaattctagc
aatgaccctagtagcaaagaaacttcatcttctacaccgaaggggactttagaagctggt
gtccagacagaaggagaattagaatgcagcgtctccctggaagtcattgcttcaggtgat
aaggaatctaagaattcagaaggcgagagttttgtggagaatatggcattgcctgaagtt
tcagagcatagctcatccccatcgtcttgcatgaaagagtcacctaaaggcgacgcatgt
taa
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