KEGG   Gossypium hirsutum (upland cotton): 107912765Help
Entry
107912765         CDS       T04793                                 

Definition
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03030  DNA replication
ghi03410  Base excision repair
ghi03420  Nucleotide excision repair
ghi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107912765
   03410 Base excision repair
    107912765
   03420 Nucleotide excision repair
    107912765
   03430 Mismatch repair
    107912765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ghi03032]
    107912765
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107912765
Enzymes [BR:ghi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107912765
    6.5.1.6  DNA ligase (ATP or NAD+)
     107912765
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107912765
DNA replication proteins [BR:ghi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107912765
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107912765
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107912765
   NER (nucleotide excision repair)
    Other NER factors
     107912765
   MMR (mismatch excision repair)
    Other MMR factors
     107912765
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C UBA_4 RMMBL Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 107912765
NCBI-ProteinID: XP_016696564
UniProt: A0A1U8K7F8
LinkDB All DBs
Position
21
AA seq 1409 aa AA seqDB search
MLPMSSQGTATATKTLALDSTQLYLTAIDSSDSTLSFPSIPSSFPPSKLIPNTRFLVDSF
RHSTTTTFSAAYFLSHFHSDHYSGLSPSWSKGIIFCSHLTSLLLIQTLKIPPHFVFPLPL
NDPVVVDGCEVILVDANHCPGAVQFLFKVPTKNGSFERYVHTGDCRYCNSMKLNSYLNDF
VGCDAIFLDTTYCNPKFVFPSQEESVDYVVSVVDRIGKEFKEKKVLFLVATYVVGKEKIL
VEVARRCKRKIFVDGRKMEILNVLGYGGDKVFTVDESESNVHVVGWNVLGETWPYFRPNF
VRMKEIMEEKGYEKIVGFVPTGWTYEIKRNKFVVRSKDSIEIHLVPYSEHSNYDELREYV
KFLKPKKVIPTVGMDIEKLDSKHADKLRRHFAGLVDEMANKKDFLMGFHRGNYGGVEKVE
MDASPDLNEDKDMERKQNILEMKSVESKNADITLNDSSPVQKPDLQDSAIPNEEERERII
EELGDSLPRWVTRDQKLNLISSSRWNVVEAVSNFYEHENELYEQISAFRTSDSASAAQAG
SSDNSVSSLNSGPFRSSRHEGLISHLSQASKPSNFKLSVRSNISPGKRKKSTENKSNKKV
KSNSKLESSGSKQPMITSFFGKVLVDDSKGGGTGLKIEECPKDEITLPGDLTKSYTEKID
QFIQIINGNESSRNYVATLLEKTQGDINRALDTYYGNPEVNHDGNTENMVFSSKSAQVWS
CSNDCPVSKNENALEESRSTPDSSLQGQPVENVDVTLVSLPPDKYKPIEHACWRSDQPAP
YVHLARTFDLVGSQRGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENIELN
IGGSLVTSALEEACGTNRSKIRDMYNDMGDLGDVAQACRQTQTLLAPPRPLLIRDVYSVL
RKISVQTGSGSTMRKKNLIVNLIRSCREKEMKFLVRTLVRNLRIGAMMKTVLPALAQAVV
MNSSRALCHEGTADCLKEKLQELSTAVTEAYNVLPNLDLLVPSLMKEGIAFSSSTLSMVP
GIPIKPMLAKITNGVPEVLKLFQNKAFTCEYKYDGQRVQIHKLANGAVRVFSRNGDETTL
RFPDLINTIKESAKPAAQTFILDAEVVAIDRKNGQKLMSFQELSSRERGSKDSLITVDKI
KVNICVFVFDIMFANGQQLLGVPLRQRRKCLKDLFHDEKLGYFEYAKEIIVEADDACLTS
EATFTQISSFLEDALQFSCEGIMVKALDIDAGYLLSKRSDTWLKVKRDYVEGLSDSLDLV
PIGAWHGNGRKAGWYSPFLMACYNPDTEDFQSVCRVMSGFSDSFYKEMKEFYAGDRILAK
KPAYYQTAEVPDMWFSPELIWEIRGADFTVSPVHQAAIGLVHPSRGISIRFPRFIRLVTD
RNPEECSTAADVAEMFHSQTRKMDVTAQR
NT seq 4230 nt NT seq  +upstreamnt  +downstreamnt
atgctgccaatgtcatctcaagggacggccaccgccaccaaaacacttgcgttagactcc
acccaactttatctcactgccatagactcctccgattccaccctttcttttccctctatc
ccctcctctttccctccctctaaactcatacccaatacccgattccttgtcgactccttc
cgccactccaccaccaccaccttctccgccgcctacttcctctcccacttccactccgac
cactactccggcctctccccttcctggtccaaaggcatcatcttttgttcccacctcact
tccctcctcctcatccaaacccttaaaatcccgcctcatttcgtcttccctttacctcta
aacgaccccgttgtggtagatggctgcgaggtcattctcgttgacgccaatcattgcccc
ggtgctgtccaattcctattcaaagttcccacaaaaaacgggagctttgaaaggtatgtt
cacacgggtgattgtcgttattgtaattcgatgaagttgaatagttatttgaatgacttt
gttggttgtgatgcgatttttttagatactacttattgtaatccaaaattcgtatttcct
tctcaagaagaatcggttgattatgtagttagtgtggtagataggataggaaaggaattt
aaagaaaaaaaggttttgtttcttgttgccacttatgttgttggaaaagagaagattttg
gttgaggtcgcgaggcgatgtaagaggaagatatttgttgatgggaggaaaatggagatt
ttaaatgttttggggtatgggggtgataaagttttcacggtagatgagagtgagagtaat
gttcatgtcgttggttggaatgtattaggcgagacgtggccgtattttcggccgaatttt
gtgagaatgaaagagattatggaggaaaaagggtatgagaagattgttggctttgtgccg
actgggtggacttatgaaattaaacggaataaatttgtagtgaggtcaaaagattcaatc
gagatacatctagtcccttacagtgagcattctaattatgatgagcttagagaatatgtg
aagtttttgaaaccaaagaaggttattcctactgttggcatggacattgagaagcttgac
agtaagcatgctgataagctgagaaggcactttgctggtctggttgatgaaatggcaaat
aaaaaggacttcctgatgggttttcatcgcggcaactatgggggtgtagaaaaagttgaa
atggatgctagtcctgacttgaatgaggacaaggacatggagagaaagcaaaatatattg
gaaatgaaatctgttgagagtaaaaatgcagatattactttgaatgattcatctcctgtg
cagaaacctgatttacaagattcagctataccgaatgaggaggaaagagagagaatcatt
gaggaattaggtgactctttgcccagatgggtgaccagggaccagaaattaaatttgatc
agcagctcaagatggaatgttgttgaagcagtttctaatttttatgaacatgaaaatgag
ttatacgagcaaatctctgcttttagaacttctgattctgcctctgctgctcaggcaggt
tcatctgacaactctgtctcatctttgaattcagggccttttagaagtagcaggcatgaa
ggtttaatcagtcatttaagtcaagccagcaagccttctaattttaaactttcagttcgg
agtaacatatctcccggtaaaaggaagaaaagtactgagaacaagtcaaataagaaagta
aaaagcaactcaaaactggaatctagcgggtcaaagcaacctatgataactagcttcttt
ggtaaagttttggttgatgactctaaaggtggtgggactggcttgaaaattgaggaatgc
cctaaggatgaaatcacattgcctggtgacttgactaaatcatatacagagaaaatagat
cagtttattcagataataaatggcaatgaatcgtcaagaaattatgtggccaccttactt
gagaagacccaaggagatatcaacagggcactggatacatattatggtaatcctgaagtg
aaccatgatgggaatacggaaaatatggtattttccagcaaatcagctcaggtctggagc
tgtagtaatgattgccctgttagcaagaatgaaaatgcactggaggagtcaagatctact
ccggattcatctttgcaaggacaaccagtggaaaatgttgacgtaactcttgtatcattg
cctcctgataaatataaacccattgagcatgcatgctggaggtctgaccagcctgctcca
tatgtccatcttgcacggacttttgaccttgttggcagtcaaaggggaaagatcaaagct
acttccatgctttgcaatatgtttaggagtttgctggccttatcccctgaggatgtgctt
cctgctgtgtatctgtgcaccaacaaaatcgccgctgatcatgaaaatattgaattgaat
attggcggtagtttggttacatctgcactggaagaagcttgtgggactaaccgttcaaaa
ataagggatatgtacaatgacatgggtgatcttggtgatgttgcacaagcatgccgacaa
acccaaactttacttgctcctccacgaccactattaattagggatgtatattctgtgctt
cggaagataagtgtacaaacaggcagtggcagcaccatgcggaagaaaaaccttattgtg
aatcttatacgttcatgtagagagaaggagatgaagtttctagtgagaactttggtcagg
aatttgcgaataggagcaatgatgaaaactgttcttcctgcattggctcaagcagttgtc
atgaattcctctcgtgctctttgtcatgaagggacagcagattgtctaaaagaaaagctc
caggaactttctacagcagtaaccgaagcatataatgtacttccaaatttggatttgctt
gttccttcactaatgaaggaaggtattgcattttcatcatcaaccttgtcaatggttccg
ggaatacctattaaacccatgcttgcaaaaattaccaatggggttccagaagtactgaag
ctttttcaaaacaaagcttttacatgtgaatataaatatgatggtcagcgtgtccagatt
cacaaattggctaatggagcggtgcgtgtcttttcacgaaatggggatgaaacaacatta
agatttccagatttaattaatacaattaaagaatctgctaagcctgctgcccagactttc
atattggatgctgaggtagttgcaattgataggaagaatggtcagaagctgatgtccttc
caagaattatcttcaagagaaagaggaagcaaagattctttgatcacagtggacaaaata
aaggttaatatttgcgtatttgtgtttgacatcatgtttgctaatggacagcagctgcta
ggtgttcctctacgccaaagaaggaaatgtttgaaggatttgtttcatgatgagaagttg
ggttattttgaatatgcaaaagaaatcatagtggaagcagatgatgcttgtttgaccagt
gaggccacatttactcagataagctcttttcttgaagatgcattgcagttctcatgtgaa
ggaattatggttaaagccttagatattgatgctggataccttctgtcaaaacgtagtgat
acatggttaaaggtgaagcgagactatgtggaaggattaagcgattcccttgatttagtc
ccaattggtgcttggcatggcaatggaagaaaagcgggatggtacagccccttcctcatg
gcatgctacaacccagacactgaagattttcaaagtgtatgtcgtgttatgtctggattc
tctgattcattttacaaagagatgaaagagttctatgcgggggataggatcttagccaaa
aagccagcttactatcaaacagctgaggtgcctgatatgtggttctctccagaacttatt
tgggaaataagaggtgcggacttcaccgtatcaccggttcatcaggctgcgataggatta
gttcatccgtcgcgtggcatctcaataagatttcctaggttcattcgcttggttacagat
cggaaccccgaggaatgtagcacggcagcagatgtagctgaaatgtttcattcgcagact
cgaaagatggatgtgacggcccaacgatga

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